The study investigates whether cross‑lingual clinical annotation projection can be treated as a constrained text‑generation task that preserves the original text while inserting entity tags. Using a workflow that embeds tags directly into immutable target‑language text and then validates them deterministically, the authors evaluated this approach against supervised candidate‑span projection and hybrid ML‑LLM refinement across six languages. Results show that direct LLM projection, particularly with GLM 5.2 and Gemma4:31B, achieves the highest strict F1 scores (up to 0.9201) and outperforms previous methods by 0.0564–0.1512, producing over 55,000 grounded mentions with accurate offsets.
By \'Alvaro Rey-Blanes, Francisco J. Moreno-Barea, Francisco J. Veredas
The study investigates whether cross‑lingual clinical annotation can be treated as a constrained text‑generation task that preserves the original text while inserting entity tags. Using a workflow that embeds tags directly into immutable target‑language text and then validates them deterministically, the authors compare this approach to supervised candidate‑span projection and hybrid ML‑LLM refinement across six languages. Results show that direct LLM projection, particularly with GLM 5.2 and Gemma4:31B, achieves the highest strict F1 scores, surpassing previous state‑of‑the‑art by up to 0.15 and producing over 55,000 grounded mentions with accurate offsets.
This study benchmarks transformer models for Bangla medical named entity recognition (NER), comparing BanglaBERT, multilingual BERT (mBERT), XLM‑RoBERTa, and GPT‑4o mini under zero‑shot and few‑shot prompting. Across a full test set of 3,179 samples, fine‑tuned XLM‑RoBERTa achieves a new state‑of‑the‑art F1‑score of 0.5959, while BanglaBERT lags with 0.4937, suggesting that domain diversity outweighs language specificity. The analysis shows high performance on Medicine and Specialist entities (F1 > 0.83) but lower accuracy on Symptoms (F1 0.4367), and demonstrates that fine‑tuned transformers outperform prompt‑only approaches by a factor of 3.76.
By Rakib Abdullah, Md. Maruful Islam Maruf
This thesis explores how to select and adapt NLP models for global health literature when annotated data and computational resources are scarce. It compares skip‑gram word2vec models trained on increasingly large specialized corpora with BioWordVec for semantic tag discovery, finding that larger coverage does not always yield more useful domain associations. The study also evaluates convolutional spaCy models versus a RoBERTa transformer for named entity recognition, noting a trade‑off between higher F1 scores and longer inference time, and investigates MiniLM few‑shot versus BART‑MNLI zero‑shot classification for multi‑label topic classification, highlighting practical constraints of inference cost.
"whyItMatters":"The work provides empirical guidance on balancing model accuracy and resource demands for building knowledge systems in low‑resource global health settings."
By Genis Skura, Antoine Geissb\"uhler, Jean-Luc Falcone
arXiv:2609.12544v1 Announce Type: new
Abstract: Clinical de-identification relies on accurately identifying personally identifiable information (PII). However, manually annotated datasets are costly...
By Linh Uyen Le, Christian Hoang, Huy Hoang Ha
arXiv:2608.29890v1 Announce Type: new
Abstract: Biomedical Named Entity Recognition (NER) is fundamental to healthcare AI applications, including clinical decision support and medical information ext...
By Nhu Vo, Phuong Nguyen, Nu Uyen Phuong Le, Inigo Jauregi Unanue, Dung D. Le, Massimo Piccardi, Wray Buntine
arXiv:2606. 01904v1 Announce Type: cross Abstract: The increasing application of Natural Language Processing (NLP) in healthcare demands language models specifically attuned to the complexities of clinical language.
By Christian Autenried, Cosimo Persia
The paper introduces a web‑data curation recipe for pretraining medical encoders, addressing the scarcity of large, diverse corpora in dense‑terminology domains like medicine. It proposes two complementary techniques: medical‑term density filtering to select documents rich in medical terminology, and signal‑amplifying rephrasing that uses an LLM to rewrite documents into denser variants with broader entity contexts. Applied to French medical NLP, the recipe produces the FineMed corpus and the DoctoBERT encoder family, achieving state‑of‑the‑art results on the DrBenchmark public benchmark and a proprietary clinical NER task.
By Bofeng Huang, Jacques Sun, Diane Bouchacourt, Nicolas Barascud, Fajwel Fogel
arXiv:2606. 07853v1 Announce Type: cross Abstract: Large Language Models are transforming the support for clinical decision and their application in real scenarios.
By Giordano de Pinho Souza, Glaucia Melo, Josefino Cabral Melo Lima, Daniel Schneider
PAINT is a multilingual framework that studies pain representation in medical exams and real‑world clinical texts across English, Spanish, Portuguese, and Japanese. It provides nine pain‑focused dataset partitions with clinician annotations, a structured schema for pain relevance, presence, location, descriptors, and demographics, and an ensemble of large language models that achieve high macro‑F1 scores and accuracy. The authors release the WorldMedQA‑Pain ensemble labels, extraction pipeline, validation scripts, and annotation sheets to support pain‑centered clinical NLP research worldwide.
arXiv:2608. 19981v1 Announce Type: new Abstract: We present HealMed, an expert-reviewed benchmark for multilingual evaluation of large language models in medicine.
By Yingjian Chen (Drew), Fan Gao (Drew), Sherry T. Tong (Drew), Haoyu Zhang (Drew), Aosong Feng (Drew), Kevin W. Jin (Drew), Xing Wu (Drew), Jinghui Lu (Drew), Abdul Samad (Drew), Akbar Faruqi (Drew), Cesar Caraballo (Drew), Cibele Brand\~ao (Drew), Dhruva (Drew), Gupta, Eunji Jeon, Gabriel Madera-Santiago, Geon Lee, Hugo Toshio Itikawa, Insook Cho, Isabelli Martins, Isarar Siddique, Israr Ahmed, Jihyo Kwak, Kanyakorn Veerakanjana, Luis Guilherme Cardoso, Minjin Kim, Piyalitt Ittichaiwong, Renee Dua, Santiago Gudi\~no-Rosales, Xiujie Chen, Zeo Lapalus, Zixin Xu, Michihiro Yasunaga, Rex Ying, Heuiseok Lim, Jaewoo Kang, Chanjun Park, Hang Jiang, Ethan Goh, Hyunjae Kim, Edison Marrese-Taylor, Yusuke Iwasawa, Yutaka Matsuo, Qingyu Chen, Irene Li
arXiv:2604. 25374v2 Announce Type: replace-cross Abstract: Background: Dutch medical corpora are scarce, limiting NLP development.
By B. van Es