En-ViMedNER: An English-Vietnamese Parallel Biomedical Corpus with UMLS Semantic Type Annotations
Read the original on arXiv Computation and Language →The Flow has not summarised this story yet — read it at arXiv Computation and Language.
The Flow has not summarised this story yet — read it at arXiv Computation and Language.
arXiv:2608. 16643v1 Announce Type: cross Abstract: Automated detection of errors in clinical documentation is a promising application of large language models (LLMs), yet decisions to deploy such models rest on benchmarks that evaluate each clinical note in isolation.
Automated detection of errors in clinical documentation is a promising application of large language models (LLMs), yet decisions to deploy such models rest on benchmarks that evaluate each clinical note in isolation. Error-detection benchmarks are typically constructed by injecting errors into notes, such that each erroneous note has a natural counterpart.
arXiv:2606. 01904v1 Announce Type: cross Abstract: The increasing application of Natural Language Processing (NLP) in healthcare demands language models specifically attuned to the complexities of clinical language.
The paper compares generative and encoder-based neural models for multilingual Named Entity Recognition (NER) across the eleven languages of the Naamapadam benchmark. Five classic model families, four decoder-only large language models fine‑tuned with LoRA and 4‑bit NF4 quantisation, and nine generative models in zero‑to‑5‑shot inference were evaluated under strict CoNLL span‑level metrics. Encoder-based models (mBERT and XLM‑R) achieved substantially higher F1 scores—up to 0.675 on Hindi—than any generative architecture, with gaps of 7.5–40 percentage points; the best few‑shot result reached only 28% of the encoder baseline. The study identifies three language clusters (encoder‑dominant, partial‑coverage, and failure‑zone) and offers deployment guidelines based on transfer learning and low‑resource NLP principles.
BioELX is a retrieve‑rerank framework for cross‑lingual biomedical entity linking that tackles two key problems: the English‑biased UMLS alias training data and the degradation caused by naïvely adding context. It fine‑tunes SapBERT_multi with Wikidata‑derived cross‑lingual alias supervision to create shared concept neighborhoods, and then reranks candidates using pretrained LLMs with mention‑anchored prompting to focus on the target mention. Experiments demonstrate state‑of‑the‑art performance on four benchmarks, improving Recall@1 by 4.8–18.2 percentage points without task‑specific annotations.
The paper investigates how to fairly compare language models across languages, noting that current evaluation methods vary widely and lack empirical validation. By training controlled monolingual models on parallel data and testing multilingual LLMs, the authors find that many normalized metrics suffer from biases due to tokenization, encoding, and orthographic differences. Instead, they recommend using sentence‑level negative log‑likelihood over semantically equivalent sequences for more reliable cross‑lingual comparisons.