The study investigates whether cross‑lingual clinical annotation can be treated as a constrained text‑generation task that preserves the original text while inserting entity tags. Using a workflow that embeds tags directly into immutable target‑language text and then validates them deterministically, the authors compare this approach to supervised candidate‑span projection and hybrid ML‑LLM refinement across six languages. Results show that direct LLM projection, particularly with GLM 5.2 and Gemma4:31B, achieves the highest strict F1 scores, surpassing previous state‑of‑the‑art by up to 0.15 and producing over 55,000 grounded mentions with accurate offsets.
arXiv:2611.07940v1 Announce Type: cross
Abstract: Background: Cardiovascular care generates large volumes of clinical free-text documentation in local languages. However, clinical natural language pr...
By Manuela-Daniela Danu, Miguel Rodr\'iguez-Ortega, Alberto Becerra-Tome, Pablo Arancibia, Fernando Gallego-Donoso, Lorenzo Pratesi, Xi Bai, Andrei-Damian Dinescu, Salvador Lima-L\'opez, Andrea Guala, Saskia Haitjema, Jonas Mack, Michele Miranda, Wesam Al Nabki, Jan Rodr\'iguez-Miret, Vasile George Marica, Vladim\'ir Kincl, Kate\v{r}ina Dost\'alov\'a, Michael Andrej, Alicia Ujil, Corinne Allaart, Machteld Boonstra, Malin Overmars, Anoop Shah, Giovanna Ceroni, Jonathan Kossoff, Domenico D'Amario, Renzo Laborante, Antonio Iaconelli, Isabella Fumarulo, Jacopo Lenkowicz, Livia Lilli, Emma Weiss, Alex Scafa, Felix Lindberg, Milou Gamage, Eul\`alia Farr\'e-Maduell, S\'ebastien Brati\`eres, Martin Krallinger, Bram van Es
arXiv:2608.29890v1 Announce Type: new
Abstract: Biomedical Named Entity Recognition (NER) is fundamental to healthcare AI applications, including clinical decision support and medical information ext...
By Nhu Vo, Phuong Nguyen, Nu Uyen Phuong Le, Inigo Jauregi Unanue, Dung D. Le, Massimo Piccardi, Wray Buntine
This study benchmarks transformer models for Bangla medical named entity recognition (NER), comparing BanglaBERT, multilingual BERT (mBERT), XLM‑RoBERTa, and GPT‑4o mini under zero‑shot and few‑shot prompting. Across a full test set of 3,179 samples, fine‑tuned XLM‑RoBERTa achieves a new state‑of‑the‑art F1‑score of 0.5959, while BanglaBERT lags with 0.4937, suggesting that domain diversity outweighs language specificity. The analysis shows high performance on Medicine and Specialist entities (F1 > 0.83) but lower accuracy on Symptoms (F1 0.4367), and demonstrates that fine‑tuned transformers outperform prompt‑only approaches by a factor of 3.76.
By Rakib Abdullah, Md. Maruful Islam Maruf
PAINT is a multilingual framework that studies pain representation in medical exams and real‑world clinical texts across English, Spanish, Portuguese, and Japanese. It provides nine pain‑focused dataset partitions with clinician annotations, a structured schema for pain relevance, presence, location, descriptors, and demographics, and an ensemble of large language models that achieve high macro‑F1 scores and accuracy. The authors release the WorldMedQA‑Pain ensemble labels, extraction pipeline, validation scripts, and annotation sheets to support pain‑centered clinical NLP research worldwide.
arXiv:2609.12544v1 Announce Type: new
Abstract: Clinical de-identification relies on accurately identifying personally identifiable information (PII). However, manually annotated datasets are costly...
By Linh Uyen Le, Christian Hoang, Huy Hoang Ha