arXiv Computation and Language
Sep 10

MedDeID enables locally governed clinical-text de-identification from real or synthetic training data

MedDeID is an on‑premises framework that combines in‑house annotation, synthetic‑note generation, model training, inference, pseudonymisation and evaluation to de‑identify clinical text. On a Dutch hospital benchmark, a hospital‑trained transformer detected 98.9 % of identifying text while redacting only 0.24 % of non‑identifier text; a synthetic‑only model achieved 96.1 %. In primary‑care notes, the synthetic‑trained model outperformed the hospital‑trained model in recall and robustness to identifier‑format changes, and an English version trained without real text reached 99.7 % and 98.9 % detection on synthetic benchmarks.

By Stig Hellemans, Tom Stroobants, Elyne Scheurwegs, Pieter Meysman, Philippe G. Jorens, Kris Laukens
arXiv Computation and Language
Sep 11

Cross-Lingual Clinical Annotation Projection as Constrained Text Generation: A Six-Language Study

The study investigates whether cross‑lingual clinical annotation projection can be treated as a constrained text‑generation task that preserves the original text while inserting entity tags. Using a workflow that embeds tags directly into immutable target‑language text and then validates them deterministically, the authors evaluated this approach against supervised candidate‑span projection and hybrid ML‑LLM refinement across six languages. Results show that direct LLM projection, particularly with GLM 5.2 and Gemma4:31B, achieves the highest strict F1 scores (up to 0.9201) and outperforms previous methods by 0.0564–0.1512, producing over 55,000 grounded mentions with accurate offsets.

By \'Alvaro Rey-Blanes, Francisco J. Moreno-Barea, Francisco J. Veredas
arXiv AI
Jun 11

Self-Prompting Small Language Models for Privacy-Sensitive Clinical Information Extraction

arXiv:2605. 04221v2 Announce Type: replace-cross Abstract: Clinical named entity recognition from dental progress notes is challenging because documentation is highly unstructured, domain-specific, and often privacy-sensitive.

By Yao-Shun Chuang, Tushti Mody, Uday Pratap Singh, Shirindokht Shiraz, Chun-Teh Lee, Ryan Brandon, Muhammad F Walji, Xiaoqian Jiang, Bunmi Tokede