arXiv:2606. 01904v1 Announce Type: cross Abstract: The increasing application of Natural Language Processing (NLP) in healthcare demands language models specifically attuned to the complexities of clinical language.
By Christian Autenried, Cosimo Persia
The study investigates whether cross‑lingual clinical annotation projection can be treated as a constrained text‑generation task that preserves the original text while inserting entity tags. Using a workflow that embeds tags directly into immutable target‑language text and then validates them deterministically, the authors evaluated this approach against supervised candidate‑span projection and hybrid ML‑LLM refinement across six languages. Results show that direct LLM projection, particularly with GLM 5.2 and Gemma4:31B, achieves the highest strict F1 scores (up to 0.9201) and outperforms previous methods by 0.0564–0.1512, producing over 55,000 grounded mentions with accurate offsets.
By \'Alvaro Rey-Blanes, Francisco J. Moreno-Barea, Francisco J. Veredas
The paper introduces a web‑data curation recipe for pretraining medical encoders, addressing the scarcity of large, diverse corpora in dense‑terminology domains like medicine. It proposes two complementary techniques: medical‑term density filtering to select documents rich in medical terminology, and signal‑amplifying rephrasing that uses an LLM to rewrite documents into denser variants with broader entity contexts. Applied to French medical NLP, the recipe produces the FineMed corpus and the DoctoBERT encoder family, achieving state‑of‑the‑art results on the DrBenchmark public benchmark and a proprietary clinical NER task.
By Bofeng Huang, Jacques Sun, Diane Bouchacourt, Nicolas Barascud, Fajwel Fogel
The study investigates whether cross‑lingual clinical annotation can be treated as a constrained text‑generation task that preserves the original text while inserting entity tags. Using a workflow that embeds tags directly into immutable target‑language text and then validates them deterministically, the authors compare this approach to supervised candidate‑span projection and hybrid ML‑LLM refinement across six languages. Results show that direct LLM projection, particularly with GLM 5.2 and Gemma4:31B, achieves the highest strict F1 scores, surpassing previous state‑of‑the‑art by up to 0.15 and producing over 55,000 grounded mentions with accurate offsets.
arXiv:2608.29890v1 Announce Type: new
Abstract: Biomedical Named Entity Recognition (NER) is fundamental to healthcare AI applications, including clinical decision support and medical information ext...
By Nhu Vo, Phuong Nguyen, Nu Uyen Phuong Le, Inigo Jauregi Unanue, Dung D. Le, Massimo Piccardi, Wray Buntine
This thesis explores how to select and adapt NLP models for global health literature when annotated data and computational resources are scarce. It compares skip‑gram word2vec models trained on increasingly large specialized corpora with BioWordVec for semantic tag discovery, finding that larger coverage does not always yield more useful domain associations. The study also evaluates convolutional spaCy models versus a RoBERTa transformer for named entity recognition, noting a trade‑off between higher F1 scores and longer inference time, and investigates MiniLM few‑shot versus BART‑MNLI zero‑shot classification for multi‑label topic classification, highlighting practical constraints of inference cost.
"whyItMatters":"The work provides empirical guidance on balancing model accuracy and resource demands for building knowledge systems in low‑resource global health settings."
By Genis Skura, Antoine Geissb\"uhler, Jean-Luc Falcone
arXiv:2609.26347v1 Announce Type: cross
Abstract: The scarcity of non-English language data in specialized domains significantly limits the development of effective Natural Language Processing (NLP)...
By Julien Knafou, Luc Mottin, Ana\"is Mottaz, Alexandre Flament, Patrick Ruch
arXiv:2606. 12569v1 Announce Type: cross Abstract: We present EDEN (Emergency Department Electronic Notes), a new and unique large-scale corpus of clinical notes produced in Emergency Departments of Italian hospitals.
By Tiziano Labruna, Guido Bertolini, Pietro Ferrazzi, Bernardo Magnini
arXiv:2608.28608v1 Announce Type: cross
Abstract: Ancient Indian medical texts like Sushruta Samhita have extensive information on diseases, treatments, and surgical techniques. Yet, their ancient fo...
By M. S. Rajeevan, B. Mini Devi, V. S. Anoop, C. Mallikarjuna
arXiv:2608. 19981v1 Announce Type: new Abstract: We present HealMed, an expert-reviewed benchmark for multilingual evaluation of large language models in medicine.
By Yingjian Chen (Drew), Fan Gao (Drew), Sherry T. Tong (Drew), Haoyu Zhang (Drew), Aosong Feng (Drew), Kevin W. Jin (Drew), Xing Wu (Drew), Jinghui Lu (Drew), Abdul Samad (Drew), Akbar Faruqi (Drew), Cesar Caraballo (Drew), Cibele Brand\~ao (Drew), Dhruva (Drew), Gupta, Eunji Jeon, Gabriel Madera-Santiago, Geon Lee, Hugo Toshio Itikawa, Insook Cho, Isabelli Martins, Isarar Siddique, Israr Ahmed, Jihyo Kwak, Kanyakorn Veerakanjana, Luis Guilherme Cardoso, Minjin Kim, Piyalitt Ittichaiwong, Renee Dua, Santiago Gudi\~no-Rosales, Xiujie Chen, Zeo Lapalus, Zixin Xu, Michihiro Yasunaga, Rex Ying, Heuiseok Lim, Jaewoo Kang, Chanjun Park, Hang Jiang, Ethan Goh, Hyunjae Kim, Edison Marrese-Taylor, Yusuke Iwasawa, Yutaka Matsuo, Qingyu Chen, Irene Li
arXiv:2609.12544v1 Announce Type: new
Abstract: Clinical de-identification relies on accurately identifying personally identifiable information (PII). However, manually annotated datasets are costly...
By Linh Uyen Le, Christian Hoang, Huy Hoang Ha
DocTalkBN is a large-scale multimodal dataset of authentic expert telemedicine conversations in Bengali, comprising 557.63 hours of paired audio and text, 1,515 multi-turn patient calls, and 10,274 host–doctor question–answer exchanges across 26 medical specialties. The dataset contains 1.7 million tokens and preserves the spontaneity and contextual richness of real medical interactions in a low-resource language. Three downstream tasks—medical triage classification, advice safety evaluation, and medical named entity recognition—are constructed to benchmark large language models and encoder-based baselines, demonstrating DocTalkBN’s practical usefulness for clinically grounded reasoning.
By Anik Saha, Fahmida Sultana Naznin, Sadatul Islam Sadi, Ananya Shahrin Promi, Wahid Al Azad Navid, Rifat Shahriyar