Reference labels used to train medical image classification models are not always as certain as they may appear, and this uncertainty has implications on performance metrics. In this study, we propose...
The study investigates how confidence intervals (CIs) behave in medical imaging AI by analyzing 24 segmentation and classification tasks with 19 models per task, various metrics, aggregation strategies, and CI methods. It finds that required sample sizes for reliable CIs vary widely, CI behavior depends on performance metrics, aggregation strategy, and problem type, and that different CI methods differ in reliability and precision. The authors provide a decision tree to guide researchers in selecting appropriate CI methods, aiming to support future consensus guidelines on reporting performance uncertainty.
By Pascaline Andr\'e (Sorbonne Universit\'e, Institut du Cerveau - Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, H\^opital de la Piti\'e-Salp\^etri\`ere, Paris, France), Charles Heitz (Sorbonne Universit\'e, Institut du Cerveau - Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, H\^opital de la Piti\'e-Salp\^etri\`ere, Paris, France), Evangelia Christodoulou (German Cancer Research Center), Annika Reinke (German Cancer Research Center), Carole H. Sudre (Unit for Lifelong Health and Ageing at UCL, Department of Population Science and Experimental Medicine and Hawkes InstituteCentre for Medical Image Computing, Department of Computer Science, University College London, UK), Michela Antonelli (School of Biomedical Engineering and Imaging Science, King's College London, UK), Patrick Godau (German Cancer Research Center), M. Jorge Cardoso (School of Biomedical Engineering and Imaging Science, King's College London, UK), Antoine Gilson (Sorbonne Universit\'e, Institut du Cerveau - Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, H\^opital de la Piti\'e-Salp\^etri\`ere, Paris, France), Sophie Tezenas du Montcel (Sorbonne Universit\'e, Institut du Cerveau - Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, H\^opital de la Piti\'e-Salp\^etri\`ere, Paris, France), Ga\"el Varoquaux (SODA project team, Inria Saclay-\^Ile-de-France, France), Lena Maier-Hein (German Cancer Research Center), Olivier Colliot (Sorbonne Universit\'e, Institut du Cerveau - Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, H\^opital de la Piti\'e-Salp\^etri\`ere, Paris, France)
arXiv:2609.15180v1 Announce Type: new
Abstract: Vision-language models are increasingly explored for clinical prediction from electronic health records and medical images, where identifying unreliabl...
By Mingcheng Zhu, Jinning Liang, Tingting Zhu
arXiv:2607. 26333v1 Announce Type: cross Abstract: Chest X-ray (CXR) machine learning relies heavily on automated evaluation using reference standards that aim to approximate clinical judgment.
By Panagiotis Fytas, Ian Selby, Clemens Karner, Judith Babar, Simon Baker, Jake Beckford, Timothy J. Sadler, Shahab Shahipasand, Arthikkaa Thavakumar, John Li Chen, Alex Sawer, Michael Roberts, Jonathan Weir-McCall, J. H. F. Rudd, Carola-Bibiane Sch\"onlieb, Anna Korhonen, Anna Breger
The paper investigates how pre‑training strategy, dataset size, and domain affect uncertainty estimation in vision medical foundation models. It compares point‑prediction calibration with conformal (region) prediction across retinal, histopathological, and chest X‑ray models, finding that domain‑specific, self‑supervised pre‑training yields better calibration and more efficient conformal sets. The study shows that standard recalibration alone cannot fully reconcile uncertainty differences between models trained on different data sources.
By Haoxu Huang, Narges Razavian
The paper examines whether model uncertainty aligns with human disagreement on vision tasks. Using multi‑annotator datasets (FER+ and CIFAR‑10H), the authors find that pretrained models rarely reflect the ambiguity humans perceive, with weak correlations between model confidence and human disagreement. Predictive multiplicity offers only modest improvement, indicating that common uncertainty metrics fail to flag ambiguous cases.
The paper introduces a decision‑aware evaluation protocol for medical image segmentation uncertainty that separates uncertainty estimation from deferral policy and assesses their joint performance under fixed review budgets. It reports metrics such as fixed‑budget error reduction, risk‑coverage behavior, region‑level review proxies, structural failure modes, and sensitivity to review assumptions. Experiments on retinal vessel, skin lesion, and polyp segmentation with various backbones and uncertainty estimators show that estimator rankings vary with review unit, uncertainty target, and cost model, and that boundary and thin‑structure failures are partly due to annotation ambiguity.
By Saket Maganti, Shreyank N Gowda
arXiv:2608.22059v1 Announce Type: cross
Abstract: Pretrained image encoders are central to medical image classification, where expert annotation is costly and task-specific cohorts are often limited....
By Xingtao Lin, Hangqi Ren, Caiwan Sun, You Chen
arXiv:2509. 19671v3 Announce Type: replace Abstract: Public datasets of Chest X-Rays (CXRs) have long been a popular benchmark for developing machine learning (ML) computer vision models in healthcare.
By Andrew Wang, Jiashuo Zhang, Michael Oberst
arXiv:2606. 15910v2 Announce Type: replace Abstract: A vision-language model can answer a question about a chest radiograph or a pathology slide fluently and confidently while barely using the image, relying instead on language priors.
By Reza Khanmohammadi, Kundan Thind, Mohammad M. Ghassemi
arXiv:2609.22281v1 Announce Type: new
Abstract: Foundation models have recently demonstrated strong capabilities across a wide range of medical imaging tasks. However, their performance in structured...
By Benjamin Renoust, Pierre Baudot, Tiffany Foriel, Yousra Haddou, Charles Voyton, Pierre-Henri Siot, Ezequiel Geremia, Danny Francis, Jean-Christophe Brisset, Val\'erie Bourd\`es, Sylvain Bodard, Benoit Huet
The paper investigates how uncertainty quantification fails in selective prediction systems when clinical data exhibit severe class imbalance, leading to systematic exclusion of minority patients. Through experiments on 56 synthetic scenarios and three neurodegenerative disease cohorts, the authors show that standard uncertainty measures become proxies for class membership rather than true ambiguity, and that combining class‑aware correction (CCR) with threshold‑aware metrics restores proper monotonicity and protects minority patients. The study proposes adopting threshold‑aligned uncertainty measures and class‑stratified evaluation to mitigate this bias and improve safety in clinical AI pipelines.
By Walter Endrizzi, Flavio Ragni, Raffaele Marchesi, Stefano Bovo, Monica Moroni, Giuseppe Jurman, Venet Osmani