arXiv Computer Vision

CardioDrift: Automatic Cardiac Motion Tracking on a 3D Atlas Mesh via Shape-aware Coherent Point Drift with Slice Shift Correction

CardioDrift is a fully automatic, atlas‑based framework that tracks cardiac motion on a 3D atlas mesh using a shape‑aware Coherent Point Drift algorithm. It jointly registers atlas surfaces of multiple cardiac regions to cine CMR segmentation contours across the cardiac cycle, while embedding slice‑shift correction to reduce misalignment artefacts. In evaluations on 1,301 UK Biobank subjects and the M&M dataset, CardioDrift achieved Dice similarity coefficients of 92.23 ± 8.70 % for the left ventricle, 82.11 ± 7.56 % for the myocardium, and 88.69 ± 4.13 % for the right ventricle, outperforming all baselines on every distance and overlap metric.

arXiv AI
1d ago

A latent ODE approach to full-cycle biventricular cardiac motion modeling from cine MRI

The paper introduces a latent dynamical model that captures full‑cycle biventricular cardiac motion from cine MRI using a heart‑rate‑aware neural ODE and a graph‑based mesh autoencoder. It encodes ventricular anatomy and motion as a continuous latent trajectory, with a covariate‑conditioned prior for the end‑diastolic state and a Cox model linking deviations to incident heart failure. In a large UK Biobank cohort, adding the latent score to existing risk equations improved predictive performance, outperforming several established cardiac markers and alternative modeling approaches.

By David Br\"uggemann, Ekaterina Krymova, Firat \"Ozdemir, Jochen von Spiczak, Sebastian Kozerke, Samia Mora, Robert Manka, Mathieu Salzmann, Olga V. Demler
arXiv AI
Jun 26

A Latent ODE Approach to Spatiotemporal Modeling of Cine Cardiac MRI

arXiv:2606. 26718v1 Announce Type: new Abstract: Cardiac magnetic resonance imaging (CMR) captures rich spatiotemporal information about ventricular structure and motion, but conventional risk models use only a few image-derived indices from selected cardiac phases.

By David Br\"uggemann, Ekaterina Krymova, Firat \"Ozdemir, Jochen von Spiczak, Sebastian Kozerke, Samia Mora, Robert Manka, Mathieu Salzmann, Olga V. Demler
arXiv AI
Jun 12

Transformer-Guided Graph Attention for Direct Cardiac Mesh Reconstruction: A Structural Digital Twin Framework

arXiv:2606. 13188v1 Announce Type: cross Abstract: Building patient-specific cardiac models sits at the heart of precision cardiology, yet getting those models into clinical use keeps running into the same wall: mesh generation is slow, messy, and frustrating.

By Abhishek H S, Akash Ganamukhi, Abhimanyu Suresh, Aditya G Hiremath, Prasad B Honnavalli, Adithya Balasubramanyam
arXiv Computer Vision
Sep 7

Orientation-Robust Latent Motion Trajectory Learning for Annotation-free Cardiac Phase Detection in Fetal Echocardiography

The paper introduces ORBIT, a self‑supervised method for detecting end‑diastolic and end‑systolic cardiac phases in fetal echocardiography without manual annotations. ORBIT learns a latent motion trajectory through registration, enabling orientation‑robust identification of phase transitions across diverse fetal heart positions. Evaluated on normal and congenital heart disease cases, it achieves low mean absolute errors (≈1.9–2.4 frames) and outperforms prior annotation‑free approaches that assume fixed orientations.

By Yingyu Yang, Qianye Yang, Can Peng, Elena D'Alberti, Olga Patey, Aris T. Papageorghiou, J. Alison Noble
arXiv AI
Jul 7

From Raw Segmentations to Simulation-Ready Cardiac Meshes: An Automated Framework for Anatomical Reconstruction and Virtual Cohort Generation

arXiv:2607. 02564v1 Announce Type: cross Abstract: Computational models of the human heart are widely used to study electromechanical and fluid-dynamical cardiac function and to support applications such as in silico clinical trials.

By Francesco Fabbri, Martino Andrea Scarpolini, Paolo Ciancarella, Francesco Tudisco, Roberto Verzicco, Alessandro Ricci, Francesco Viola
arXiv Computer Vision
Sep 25

Anatomy-Aligned Surface Field Learning for Myocardial Reconstruction from Sparse Short-Axis Cine MRI

The paper presents an anatomy‑aligned surface learning framework for reconstructing patient‑specific 4D myocardial surfaces from sparsely sampled short‑axis cine MRI. By parameterizing epicardial and endocardial surfaces on a shared circumferential‑longitudinal UV domain, the method transforms irregular 3D reconstruction into structured coordinate‑field completion, enabling explicit correspondence across subjects and cardiac phases. Experiments on three public datasets show the approach outperforms mesh‑based and implicit methods, achieving Chamfer distances around 2.6–2.9 mm and preserving ventricular function with small errors in volume and ejection fraction.

By Xiaohan Yuan, Xuan Yang, Qingya Li, Yangang Wang, Lei Li
arXiv Computer Vision
Oct 9

EchoDiST: Self-distillation-based joint learning for diffusion-conditioned echocardiographic myocardial motion estimation

EchoDiST is an unsupervised framework for estimating myocardial motion in echocardiography, combining self‑distillation joint learning of anatomical segmentation and motion estimation with a diffusion‑conditioned network. The method uses limited anatomical annotations and stochastic perturbations during training, yet requires only a single deterministic forward pass at inference. Evaluated on three datasets, EchoDiST consistently outperforms seven other learning‑based approaches in anatomical alignment, strain assessment, and functional metrics, with statistically significant improvements across cross‑view and cross‑dataset tests.

By Feiyue Qi, Xingyue Wei, Jianwen Luo
arXiv AI
Oct 7

Local2Mesh: Spatially Localized Contour-to-Mesh for Left Ventricular Reconstruction from Sparse 2D Cardiac MRI

Local2Mesh is a spatially localized contour‑to‑mesh framework that reconstructs 3‑D left ventricular geometry from sparse 2‑D cardiac MRI contours without requiring 3‑D mesh annotations. It corrects inter‑slice misalignment through geometry‑aware alignment and routes contour features to template vertices via a plane‑aware Local Router, then jointly uses local and global features to deform a template mesh. Experiments on M&Ms‑2 and ACDC datasets show superior geometric reconstruction, functional estimation, and disease classification compared to existing methods, with strong cross‑dataset generalization.

By Haoyu Wu, Ling Lin, Pascal Lef\`evre, Ruizhe Li, Xiaowu Sun
Hugging Face Trending Papers
Jun 30

Self-Supervised Temporal Regularization for Landmark-Based Cardiac Segmentation with Automatic AHA Regional Mapping

Graph-based cardiac segmentation with implicit anatomical correspondences provides topological guarantees and population-level analysis capabilities, but models trained on independent frames of image sequences exhibit temporal discontinuities that affect reliable clinical measurements, particularly in cardiac ultrasound. In this work, we introduce self-supervised temporal regularization as a post-training refinement stage that exploits the temporal coherence in image sequences to enforce consistent cardiac segmentation and motion estimation over time, without requiring per-frame annotations.

arXiv Computer Vision
Sep 14

SV-Cine: Diagnosis-Conditioned Segmentation of Single Ventricle Physiology via Generative Data Augmentation

The paper introduces SV-Cine, a cardiac MRI segmentation framework tailored for single ventricle physiology (SVP). It combines a generative data augmentation pipeline that creates synthetic 3D cardiac meshes and MRI, with a diagnosis-conditioned adaptation of the CineMA foundation model that uses patient-level diagnostic information to improve segmentation. Evaluations on an internal cohort show high Dice scores for left and right ventricles, outperforming nnU-Net, and demonstrate that incorporating diagnosis priors can adapt a pretrained model to specialized SVP tasks.

By Lila Cunge, Yuehong Liu, Hang Xu, Thomas Coudert, Pierangelo Renella, J Paul Finn, William Hsu, Kim-Lien Nguyen