arXiv:2606. 10547v1 Announce Type: cross Abstract: Energy Dispersive X-ray (EDX) tomography in Scanning Transmission Electron Microscopy (STEM) enables 3D compositional and elemental mapping at the nanoscale, but its use is limited by restricted tilt ranges and low-dose conditions required to avoid beam damage.
By Daniel del Pozo Bueno, Serge Brosset, Theo Monniez, Gabriele Navarro, Philippe Ciuciu, Zineb Saghi
arXiv:2510. 16165v2 Announce Type: replace Abstract: A key question in benchmarking generative crystal reconstruction models is how the amount and type of crystallographic information provided to a generative model affects its ability to reconstruct atomic structures.
By Charles Rhys Campbell, Aldo H. Romero, Kamal Choudhary
Precise knowledge of nuclear structure is essential across fundamental physics, yet probing these structures is notoriously difficult. To address this challenge, ultra-peripheral collisions (UPCs) provide a femtoscopic tomography for imaging the atomic nucleus.
The paper introduces a self‑supervised neural network that unifies single‑frame Fresnel coherent diffraction imaging (CDI) and overlapped ptychography. By using a fixed, pre‑estimated probe and optimizing with a Poisson negative log‑likelihood objective, the method reconstructs object patches from either a single diffraction frame or multiple overlapping measurements, achieving high SSIM scores and a ten‑fold improvement in photon‑dose efficiency. Demonstrations on synthetic patterns and real datasets from APS and LCLS show robust, high‑throughput reconstructions, with a 36× speedup over iterative solvers for a 10,304‑frame workload.
By Oliver Hoidn, Steven Henke, Albert Vong, Aashwin Mishra, Apurva Mehta, Matthew Seaberg
arXiv:2604. 01313v2 Announce Type: replace Abstract: High-fidelity simulations and complex inverse problems, such as detector modeling and unfolding, are computationally intensive bottlenecks across subatomic physics, yet essential for accurate physical interpretation.
By Zeyu Xia, Tyler Kim, Trevor Reed, Judy Fox, Geoffrey Fox, Adam Szczepaniak
arXiv:2507.23129v2 Announce Type: replace-cross
Abstract: We preseent an open-source image reconstruction package built upon PyTorch, enabling modern deep-learning reconstructions. It uses open data...
By Felix Frederik Zimmermann, Patrick Schuenke, Christoph S. Aigner, Bill A. Bernhardt, Mara Guastini, Johannes Hammacher, Noah Jaitner, Andreas Kofler, Leonid Lunin, Stefan Martin, Catarina Redshaw Kranich, Jakob Schattenfroh, David Schote, Yanglei Wu, Christoph Kolbitsch
arXiv:2609.13969v1 Announce Type: new
Abstract: Ptychographic phase reconstruction is commonly formulated as an iterative inverse problem, requiring repeated object-probe updates and resulting in sub...
By Wen-Chun Lin, Yu-Chee Tseng, Jen-Jee Chen, Nan-You Chen
The paper introduces Scalable Bayesian Optimization of Composite Functions (SBOCF) for efficiently estimating physical parameters from scientific images, specifically targeting electron microscopy PACBED patterns. SBOCF leverages the composite structure of the image-matching objective, reducing modeled outputs from 24,649 to 11 by using patch-level summaries and correction terms. With only 50 simulator evaluations, SBOCF outperformed standard Bayesian optimization, achieving up to 290× lower median SSE on synthetic SrTiO3 benchmarks and producing accurate parameter estimates on experimental data without task-specific pretraining.
By Dasol Yoon, Poompol Buathong, Chia-Hao Lee, Yujia Zhang, David A. Muller, Peter I. Frazier
arXiv:2608. 06448v1 Announce Type: cross Abstract: Recovering a periodic 3D crystal structure from sparse, unindexed electron diffraction (ED) observations is a challenging generative inverse problem.
By Germain Poloudenny, Ya\"el Fr\'egier, Arnaud Demorti\`ere
arXiv:2608. 03260v1 Announce Type: new Abstract: Pretraining has shown strong potential for learning transferable representations, yet it remains underexplored for electron-density-based molecular learning.
By Liang Shuang, Haocheng Wang, Jiayi Song, Shuquan Ye, Ben Fei
The paper introduces a ptychography‑supervised learning framework that transforms 4D‑STEM data into real‑time atomic‑resolution phase images. By training a compact model on physics‑constrained reference phase maps from a single AuPd dataset, the method predicts local phase patches directly from diffraction patterns without probe calibration or iterative optimization. The resulting workflow achieves an online latency of ~0.27 ms per probe position, a 1,000‑fold speed‑up over GPU‑accelerated ePIE, and maintains atomic‑scale lattice contrast while generalizing across materials, defocus conditions, and instruments.
By H. Yue, C. -C. Chen, C. -N. Hsiao, J. Cheng, Y. Liu, X. Z. Liao, Steve F. Shu
arXiv:2508. 05321v4 Announce Type: replace-cross Abstract: Assume you encounter an inverse problem that shall be solved for a large number of data, but no ground-truth data is available.
By Laura Hellwege, Johann Christopher Engster, Moritz Schaar, Thorsten M. Buzug, Maik Stille