arXiv Machine Learning

ED-DiT: Physics-Guided Diffusion Pretraining for Transferable Molecular Representations from Electron Density

arXiv:2608. 03260v1 Announce Type: new Abstract: Pretraining has shown strong potential for learning transferable representations, yet it remains underexplored for electron-density-based molecular learning.

arXiv Machine Learning
Jul 23

OrbitAll: A Unified Quantum Mechanical Representation Deep Learning Framework for All Molecular Systems

arXiv:2507. 03853v2 Announce Type: replace Abstract: We introduce OrbitAll, a geometry- and physics-informed deep learning framework that encodes any molecular system with arbitrary charges, spins, and environmental effects using electronic structure information.

By Beom Seok Kang, Vignesh C. Bhethanabotla, Amin Tavakoli, Maurice D. Hanisch, Arimitsu Horikawa-Strakovsky, Miguel Nouman, Danish Khan, William A. Goddard III, Anima Anandkumar
arXiv Machine Learning
Sep 21

Transformers Discover Molecular Structure Without Graph Priors

The paper investigates whether machine learning models can uncover physical patterns in atomistic data without relying on traditional physics-based inductive biases such as geometric locality or graph structures. By training a general-purpose architecture on molecular simulation data, the authors demonstrate that the model autonomously learns interatomic interaction strengths resembling classical electrostatics and identifies interaction cutoffs aligned with established physical models. The study also reports predictable neural scaling behavior and competitive accuracy on certain metrics compared to physics-informed architectures, suggesting that explicit priors may only be necessary when empirically justified.

By Tobias Kreiman, Yutong Bai, Fadi Atieh, Elizabeth Weaver, Eric Qu, Aditi S. Krishnapriyan
arXiv Machine Learning
Jul 9

Transferable FB-GNN-MBE Framework for Potential Energy Surfaces: Data-Adaptive Transfer Learning in Deep Learned Many-Body Expansion Theory

arXiv:2604. 09320v2 Announce Type: replace-cross Abstract: Mechanistic understanding and rational design of complex chemical systems depend on fast and accurate predictions of electronic structures beyond individual building blocks.

By Siqi Chen, Zhiqiang Wang, Yili Shen, Xianqi Deng, Xi Cheng, Cheng-Wei Ju, Jun Yi, Guo Ling, Dieaa Alhmoud, Hui Guan, Zhou Lin
arXiv Machine Learning
Jul 1

ElemeNet: Multiscale Molecular Machine Learning with Uncertainty Quantification Across the Periodic Table

arXiv:2606. 30961v1 Announce Type: cross Abstract: Advances in deep learning architectures and representations have enabled ML-driven chemical property prediction, but state-of-the-art (SOTA) models have remained largely confined to independent codebases and lack support for diverse chemical species.

By Jacob W. Toney, Samir Darouich, Yiran Wang, Aaron G. Garrison, Johannes K\"astner, Heather J. Kulik
arXiv Machine Learning
2d ago

Surprisingly High Redundancy in Electronic Structure Data Across Materials Explained by Low Intrinsic Dimensionality

arXiv:2507.09001v4 Announce Type: replace-cross Abstract: Machine learning (ML) models for electronic structure typically rely on large datasets generated by computationally expensive Kohn-Sham densi...

By Sazzad Hossain, Ponkrshnan Thiagarajan, Shashank Pathrudkar, Stephanie Taylor, Abhijeet S. Gangan, Amartya S. Banerjee, Susanta Ghosh
arXiv AI
Jun 15

A Fixed-Point Neural Operator for Size- and Functional-Transferable Hamiltonian Prediction

arXiv:2606. 14498v1 Announce Type: cross Abstract: Predicting the Kohn-Sham Hamiltonian with machine learning can accelerate density functional theory while retaining access to molecular orbitals, energy levels, and electronic-structure observables that energy-only surrogates cannot resolve.

By Yunhong Lou, Xihang Yue, Xinran Wei, Tianqi Deng, Linchao Zhu
arXiv AI
Aug 26

Learning the Kohn-Sham map with neural operators for quasi-linear scaling density functional theory

The paper presents a neural operator that learns the Kohn–Sham map, directly predicting electron density from the Kohn–Sham potential without orbital diagonalization. Using a domain‑invariant SE(3)‑equivariant Fourier neural operator trained on 8,504 molecules and solids, the model achieves quasi‑linear scaling self‑consistent field (SCF) convergence across diverse systems—including organic molecules, insulators, and metals—while reproducing Kohn–Sham DFT accuracy for densities, spectra, and structural observables. This enables large‑scale simulations, such as magnesium dislocation densities with 82,500 valence electrons, on a single GPU.

By Danish Khan, Maurice D. Hanisch, Nikolai Argatoff, Evan Xie, Sandeep Sharma, Anima Anandkumar