arXiv Machine Learning

AtomBench: A Benchmarking Framework for Generative Crystal Reconstruction Models in Conventional Superconductors

arXiv:2510. 16165v2 Announce Type: replace Abstract: A key question in benchmarking generative crystal reconstruction models is how the amount and type of crystallographic information provided to a generative model affects its ability to reconstruct atomic structures.

arXiv AI
Jul 28

AutoMat: Enabling Automated Crystal Structure Reconstruction from Microscopy via Agentic Tool Use

arXiv:2505. 12650v2 Announce Type: replace-cross Abstract: Reconstructing atomistic crystal structures from a single noisy STEM projection is an ill-posed inverse problem: multiple lattices can explain similar contrast, and purely feed-forward models cannot verify physical validity.

By Yaotian Yang, Yiwen Tang, Yizhe Chen, Xiao Chen, Jiangjie Qiu, Hao Xiong, Haoyu Yin, Zhiyao Luo, Yifei Zhang, Sijia Tao, Wentao Li, Qinghua Zhang, Yuqiang Li, Wanli Ouyang, Bin Zhao, Xiaonan Wang, Fei Wei
arXiv Machine Learning
Jul 16

DeepCormack: Fermi surface tomography using model-based data-driven algorithms

arXiv:2607. 13107v1 Announce Type: cross Abstract: The experimental reconstruction of the 3D two-photon momentum density (TPMD) via angular correlation of electron-positron annihilation radiation (ACAR) is a particularly useful method for studying material Fermi surfaces.

By Georg F. B. Lovric, Bryn Drury, Carola-Bibiane Sch\"onlieb, Stephen B. Dugdale, Ander Biguri
arXiv Machine Learning
Jun 8

ScatterPrism: convergence for generative simulation and inverse problems in particle and nuclear physics

arXiv:2604. 01313v2 Announce Type: replace Abstract: High-fidelity simulations and complex inverse problems, such as detector modeling and unfolding, are computationally intensive bottlenecks across subatomic physics, yet essential for accurate physical interpretation.

By Zeyu Xia, Tyler Kim, Trevor Reed, Judy Fox, Geoffrey Fox, Adam Szczepaniak
arXiv Machine Learning
Jun 9

Few-step Cofolding with All-Atom Flow Maps

arXiv:2606. 08375v1 Announce Type: new Abstract: All-atom generative modeling of 3D biomolecular complexes has emerged as the dominant paradigm for predicting the structure of proteins and protein-ligand systems.

By Gianluca Scarpellini, Ron Shprints, Peter Holderrieth, Juno Nam, Pranav Murugan, Rafael G\'omez-Bombarelli, Tommi Jaakola, Maruan Al-Shedivat, Nicholas Matthew Boffi, Avishek Joey Bose
arXiv Machine Learning
Jul 15

SinAE: A Single-Architecture Flow-Matching Autoencoder for Cross-Domain Atomic Systems

arXiv:2607. 12380v1 Announce Type: new Abstract: Small molecules, crystals, and proteins all reduce to atoms in 3D space, yet their generative pipelines remain fragmented across domains, each with its Small molecules, crystals, and proteins all reduce to atoms in 3D space, yet their generative pipelines remain fragmented across domains, each with its own graph, equivariant, or frame-based architecture.

By Yuxuan Ren, Fan Yang, Jianhua Yao, Yatao Bian