arXiv Computation and Language

NS-Copilot: An LLM-Driven Agent System for Autonomous Neuroscience Analysis

NS-Copilot is a large‑language‑model driven multi‑agent system designed to automate neuroscience data analysis. It integrates domain‑specific pre‑trained models for modalities such as EEG and extracellular spike data, and uses a natural‑language interface to orchestrate agents that plan, generate code, and synthesize results. In benchmarks on Alzheimer’s, Parkinson’s, and working‑memory spike decoding, the system consistently outperformed strong baselines across multiple trials.

arXiv AI
Aug 3

SeekBrain: An Autonomous Multi-Agent System for Accelerating Neuroscience Discovery

arXiv:2607. 29347v1 Announce Type: cross Abstract: Modern neuroscience relies on integrating multi-scale, multimodal datasets to uncover the neural principles underlying intelligence.

By Jiamin Wu, Peishan Xiang, Jingyang Chen, Yuqing Zhu, Yuxi Li, Ling Luo, Qihao Zheng, Jialiang Zu, Yongchao Wu, Mindong Liu, Haitao Wu, Chaofan Hu, Yijie Sun, Yuqi Hang, Yu Zhu, Shuo Li, Yue Fan, Shiyang Feng, Wanghan Xu, Tianlei Zhang, Jie Zhang, Wenlong Zhang, Bo Zhang, Kai Wang, Lei Bai, Mianxin Liu, Wanli Ouyang, Jiulin Du, Chunfeng Song
arXiv AI
Sep 4

NeuroWeaver: An Autonomous Evolutionary Agent for Exploring the Programmatic Space of EEG Analysis Pipelines

NeuroWeaver is an autonomous evolutionary agent that designs EEG analysis pipelines by framing pipeline engineering as a discrete constrained optimization problem solved with large language model–driven code generation. It uses a Domain‑Informed Subspace Initialization to keep the search within neuroscientifically plausible solutions and a Multi‑Objective Evolutionary Optimization to balance performance, novelty, and efficiency. On five diverse benchmarks, NeuroWeaver produces lightweight pipelines that outperform state‑of‑the‑art task‑specific methods and match or exceed large foundation models while using far fewer parameters.

By Guoan Wang, Shihao Yang, Feng Liu
arXiv AI
Jun 4

BRAINCELL-AID: An Agentic AI Created Brain Cell Type Resource for Community Annotation

arXiv:2510. 17064v4 Announce Type: replace Abstract: Single-cell RNA sequencing has transformed our ability to identify diverse cell types and their transcriptomic signatures.

By Rongbin Li, Wenbo Chen, Zhao Li, Rodrigo Munoz-Castaneda, Jinbo Li, Neha S. Maurya, Arnav Solanki, Huan He, Hanwen Xing, Meaghan Ramlakhan, Zachary Wise, Nelson Johansen, Zhuhao Wu, Hua Xu, Michael Hawrylycz, W. Jim Zheng
arXiv Machine Learning
Aug 17

BCIJelly: An integrated ecosystem for brain-computer interface research

arXiv:2608. 13576v1 Announce Type: cross Abstract: Brain-computer interface (BCI) research relies on multistage computational pipelines, yet progress remains constrained by fragmented data formats, heterogeneous decoder implementations and hardware-specific deployment toolchains, and researchers lack an integrated workflow.

By Liyuan Han, Xinrui Yang, Tianyu Zheng, Qizhi Yang, Yitao Qin, Liang Chen, Qinglai Wei, Binjie Hong, Xinhe Zhang, Rui Xiong, Yong Gu, Mu-ming Poo, Bo Xu, Chengyu Li, Tielin Zhang
Hugging Face Trending Papers
2d ago

AutoBCI: Forecast-Guided Agentic Neural Architecture Discovery for EEG-Based Brain--Computer Interfaces

AutoBCI is an agentic framework that uses a Designer Agent and a Forecaster Agent to discover and select EEG decoding architectures across diverse tasks such as emotion recognition, motor imagery, and sleep staging. The Designer Agent performs Pool‑Guided Architecture Discovery (PGAD) to generate and refine models, while the Forecaster Agent uses Performance Estimation from Early Knowledge (PEEK) to predict full‑budget validation performance from early learning curves. In experiments on 14 EEG datasets, AutoBCI with Claude Opus 5.5 achieved a 64.16% average test balanced accuracy, slightly surpassing the best baseline, and PEEK reduced prediction error by 38.1% compared to the best-observed-score baseline.

Hugging Face Trending Papers
Jul 6

EEG-SpikeAgent: Agentic Closed-Loop Program Synthesis for Automated EEG Spike Detection

Automated detection of interictal epileptiform discharges in scalp electroencephalography (EEG) is clinically important, but recent high-performing deep-learning models often trade interpretability for accuracy. We introduce EEG-SpikeAgent, a closed-loop program-synthesis framework that uses a large language model (LLM) agentic system to generate signal-processing features for spike detection in scalp EEG.

arXiv AI
Aug 28

EEG-to-Report: An Annotation and Feature-Text Framework for Training Language Models on Clinical EEG

EEG-to-Report is a browser-based annotation and feature‑text framework that links routine EEG review with the creation of AI‑ready datasets. It ingests multi‑format EEG data, standardizes channels, and provides an interactive viewer with a multimodal annotation layer that combines typed text and transcribed voice notes. For each annotated segment, a feature extraction engine computes standardized spectral, temporal, entropy, Hjorth, connectivity, and spike‑related descriptors, stored alongside clinical descriptions in a portable JSON schema, producing aligned feature‑text pairs for training multimodal EEG‑language models. The framework also includes an auto‑report module that uses an ensemble of convolutional networks and a large language model to draft clinical narratives for neurologist review, thereby streamlining annotation workflows and enabling editable draft reports.

By Xuan-The Tran, Le Trung Kien Nguyen
arXiv AI
Aug 6

BrainBench: Benchmarking Large Language Models for Comprehensive EEG Understanding

arXiv:2608. 04156v1 Announce Type: new Abstract: Electroencephalography (EEG) analysis extends beyond assigning predefined labels to recordings; it requires workflows connecting natural-language instructions, signal processing, quantitative evidence, and scientific interpretation.

By Yangxuan Zhou, Sha Zhao, Yuning Chen, Chen Wu, Jiquan Wang, Shijian Li, Gang Pan