arXiv Machine Learning By Ling-Qi Zhang, Kristin Branson

Neurodata Without Boredom: Benchmarking Agentic AI for Data Reuse

Read the original on arXiv Machine Learning →

Neuroscience data are fragmented across labs and formats, making reuse labor‑intensive. This study benchmarks coding agents on eight recent mouse neural recording papers, asking them to reformat data for a common decoder task. While agents handle many subtasks, they rarely produce fully error‑free solutions; the authors pair outcome metrics with a process rubric to evaluate errors and propose agent‑assisted data‑sharing practices.

Machine-generated by The Flow from the publisher's headline and feed description — not written or checked by a human. The full article lives at arXiv Machine Learning.

arXiv AI
Oct 9

Code Understanding is a Bottleneck for Coding Agents

The paper introduces CABRA, a synthetic benchmark that constructs coding tasks from scratch using call‑graph transformations and scales difficulty along four axes: function traversal, search, runtime resolution, and instruction following. Experiments with eight large language models and six coding agents on 6,840 CABRA tasks show that while LLM accuracy degrades with task size, agents maintain high performance by leveraging tools; larger tasks trigger more tool calls, and a separate study on SWE‑bench verifies that tool‑call counts better predict agent accuracy than lines of code edited. The authors argue that CABRA exposes weaknesses in LLMs that are hidden by tool use and highlights the importance of code‑understanding abilities beyond mere editing. whyItMatters":"The study demonstrates that coding agents’ performance is more dependent on code‑understanding than on the amount of code edited, revealing a critical bottleneck for current coding agents."

By Nishant Balepur, Kiran Tomlinson, Tobias Schnabel
arXiv AI
Jun 4

Can Generalist Agents Automate Data Curation?

arXiv:2606. 04261v1 Announce Type: new Abstract: Curating training data is among the most consequential yet labor-intensive parts of modern AI development: practitioners iteratively propose, implement, evaluate, and revise data policies against noisy benchmark feedback.

By Feiyang Kang, Hanze Li, Adam Nguyen, Mahavir Dabas, Jiaqi W. Ma, Frederic Sala, Dawn Song, Ruoxi Jia
arXiv AI
Jun 9

A case study of evaluating AI agents on a neuroscience data-to-discovery pipeline

arXiv:2606. 07718v1 Announce Type: new Abstract: Agentic AI tools offer a promising path to automating software development bottlenecks in scientific research pipelines, particularly for stages that take domain experts days to months to build, where scientists care about correctness and robustness, not implementation details.

By Kai A. Horstmann, Ethan Lin, Alice A. Robie, Jennifer J. Sun, Kristin Branson
arXiv AI
Sep 4

Efficient Test-Time Adaptation through Human-AI Interaction

The paper introduces Test-Time Adaptation through Human‑Agent Interaction (TAHI), a method that uses iterative human feedback to adapt AI agents to individual users’ criteria. By integrating cross‑session interaction data into agent context and weights, and building an evolving rubric module, the authors demonstrate that agents can improve task success by 4.5–20.9% after only a few interactions. The evolving rubric also serves as a scalable annotation tool, detecting 16.0–22.3% more failures than language models or humans alone, and personalized agents can even generalize improvements up to 8.8% across users.

By Zora Zhiruo Wang, Apurva Gandhi, Rulin Shao, Aspen Chen, Jonas Mueller, Zhiqi Liang, Jett Chen, Michael Ryan, Qianou Ma, Luxi He, Zhoujun Cheng, Andre He, Seungone Kim, Jiayi Geng, Mingqian Zheng, Weiwei Sun, Zheyuan Zhang, Xinran Zhao, Yike Wang, Abe Hou, Liwei Jiang, Pang Wei Koh, Diyi Yang, Graham Neubig, Daniel Fried
arXiv Computation and Language
Sep 3

NS-Copilot: An LLM-Driven Agent System for Autonomous Neuroscience Analysis

NS-Copilot is a large‑language‑model driven multi‑agent system designed to automate neuroscience data analysis. It integrates domain‑specific pre‑trained models for modalities such as EEG and extracellular spike data, and uses a natural‑language interface to orchestrate agents that plan, generate code, and synthesize results. In benchmarks on Alzheimer’s, Parkinson’s, and working‑memory spike decoding, the system consistently outperformed strong baselines across multiple trials.

By Wuche Liu, Yiran Qiao, Linlin Hou, Rui Yang, Shusen Pu, Song Wang, Jing Ma