arXiv:2608.30768v1 Announce Type: new
Abstract: Automatic neuron reconstruction from light microscopy images is a central problem in computational neuroanatomy. While recent methods have achieved enc...
By Zekang Yang, Jiamin Li, Zhenghua Li, Jiaqi Fan, Zengcai Guo, Xiaolin Hu
arXiv:2609.09832v1 Announce Type: new
Abstract: Recent advances in high-resolution fluorescence and electron microscopy have enabled nanoscale imaging across increasingly large brain volumes, but the...
By Jiayi Ding, Hu Zhao
arXiv:2608. 09636v1 Announce Type: cross Abstract: Accurate 3D neuron segmentation in fluorescence microscopy is critical for neuroscience.
By Haiyang Yan, Jinyue Guo, Yanchao Zhang, Bingqing Wang, Zhenchen Li, Jing Liu, Jiazheng Liu, Linlin Li, Hua Han
arXiv:2606. 14975v1 Announce Type: cross Abstract: How the wiring and functional organization of cortex shape recurrent computation remains a central question in both neuroscience and machine learning.
By Mo Shakiba, Rana Rokni, Mohammad Mohammadi, Nima Dehghani
arXiv:2609.10456v1 Announce Type: new
Abstract: Nanoscale imaging of mammalian brains is critical for connectomics. X-ray laminography enables high-throughput imaging of extended, plate-like biologic...
By Wenxuan Fang, Abraham L. Levitan, Ana Diaz, Carles Bosch, Adrian Wanner, Andreas T. Schaefer, Mirko Holler, Tomas Aidukas, Nicholas W. Phillips, Yuxin Zhang, Alexandra Pacureanu, Manuel Guizar-Sicairos, Luis Barba
arXiv:2607. 16065v1 Announce Type: cross Abstract: Retinal layer segmentation in Optical Coherence Tomography (OCT) is a fundamental step for extracting quantitative biomarkers of retinal structure.
By Iker Moran-Cavero, Monica Hernandez, Elvira Mayordomo, Naiara Artiaga, Beatriz Pardi\~nas, Beatriz Cordon, Elena Garcia-Martin
The growing number of medical vision foundation models highlights the need for effective model selection. However, mainstream selection methods rely on exhaustive fine-tuning, which is computationally expensive.
arXiv:2609. 20562v1 Announce Type: new Abstract: Automated quality assessment, enhancement, and segmentation of multiple structures in $0.
By Bahram Jafrasteh, Leo Milecki, Qingyu Zhao
Understanding the relationship between deep visual representations and the human visual system is a fundamental challenge in computational neuroscience. While modern vision models achieve strong performance in image recognition, their correspondence with the hierarchical organization of the human visual cortex remains an open question.
arXiv:2610.00860v1 Announce Type: cross
Abstract: Background and Objectives: Fluorescence-labeled cellular arbors provide readouts of neuronal and microglial morphology, but fine and weakly labeled p...
By Song Zhiying, Ling Hanyi, Wu Junyi, Jiang Yangbo
CytoNet is a foundation model trained on 1 million unlabeled microscopic image patches from over 4,000 histological sections of nine postmortem brains, and evaluated on 2,000 sections from five additional brains. By using co‑localization in the cortical sheet for self‑supervision, it learns expressive, anatomically meaningful feature representations that enable downstream tasks such as area classification, laminar segmentation, microarchitectural quantification, and exploratory mapping of cortical subdivisions. Functional parcellation analyses demonstrate links between cytoarchitecture and macroscale functional organization, establishing CytoNet as a unified framework for scalable analysis of cortical microarchitecture and its relationship to structure‑function organization in the human cerebral cortex.
By Christian Schiffer, Zeynep Boztoprak, Jan-Oliver Kropp, Julia Th\"onni{\ss}en, Katia Berr, Hannah Spitzer, Mathis Bode, Thomas Lippert, Katrin Amunts, Timo Dickscheid
arXiv:2606. 04772v1 Announce Type: cross Abstract: Understanding the relationship between deep visual representations and the human visual system is a fundamental challenge in computational neuroscience.
By Hoang-Son Vo, Van-Hung Bui, Minh-Huy Mai-Duc, Tien-Dung Mai, Soo-Hyung Kim