arXiv Machine Learning

A Multi-Agent Pipeline for Source-Grounded Synthetic Note Generation from Longitudinal Structured EHR

arXiv AI
Oct 7

Symphony for Text Generation: Benchmarking Clinical Note Generation

arXiv:2610.08161v1 Announce Type: cross Abstract: Ambient documentation systems are rapidly gaining adoption, yet their impact on clinical note quality remains poorly characterized. We introduce MedC...

By Daniel Varab, Victor Petr\'en Bach Hansen, Asbj{\o}rn W. Helge, Kevin Pelgrims, Mathias Baltzersen, Adrian Young-San Roessler, Vanessa Klungtvedt, Maximilian Brand, Lasse Krogsb{\o}ll, Henrik Cullen, Lars Maal{\o}e
arXiv Computation and Language
Sep 22

Knowledge Graph-Augmented Ambient AI for Clinical Note Generation

arXiv:2609.22239v1 Announce Type: new Abstract: Ambient AI is increasingly adopted in healthcare to automatically generate clinical notes from patient-clinician conversations, with the potential to s...

By Jakir Hossain, Yi-Fei Zhao, Hongjian Wang, Minmei Shih, Katie Leigh Mullen, Ahmad P. Tafti, Leming Zhou, Manoj Purohit, William Hogan, Jay Zeng, Elizabeth Skidmore, Yanshan Wang
arXiv AI
Jun 16

MedSynth: Realistic, Synthetic Medical Dialogue-Note Pairs

arXiv:2508. 01401v2 Announce Type: replace-cross Abstract: Physicians spend significant time documenting clinical encounters, a burden that contributes to professional burnout.

By Ahmad Rezaie Mianroodi, Amirali Rezaie, Niko Grisel Todorov, Nadine A. Friedrich, Maria P Mogollon, Alexander Hernandez-Tirado, Guillermo Lopez Garcia, Cyril Rakovski, Frank Rudzicz
arXiv AI
Oct 5

RASPER: Reward-Aligned Summarization of Clinical Notes for EHR Outcome Prediction

RASPER is a reward‑aligned summarizer that tailors the extraction of information from unstructured discharge notes to improve downstream clinical predictions. It uses a tunable LLM summarizer trained with reinforcement learning, where the reward comes from the loss of a downstream predictor, and incorporates patient‑specific context via a longitudinal encoder that soft‑prompts the summarizer with structured codes. The approach consistently outperforms strong baselines on readmission prediction and medication recommendation tasks in the MIMIC‑III and MIMIC‑IV datasets.

By Arya Hadizadeh Moghaddam, Mohsen Nayebi Kerdabadi, Chen Chen, Dongjie Wang, Zijun Yao
arXiv Computation and Language
Sep 10

MedDeID enables locally governed clinical-text de-identification from real or synthetic training data

MedDeID is an on‑premises framework that combines in‑house annotation, synthetic‑note generation, model training, inference, pseudonymisation and evaluation to de‑identify clinical text. On a Dutch hospital benchmark, a hospital‑trained transformer detected 98.9 % of identifying text while redacting only 0.24 % of non‑identifier text; a synthetic‑only model achieved 96.1 %. In primary‑care notes, the synthetic‑trained model outperformed the hospital‑trained model in recall and robustness to identifier‑format changes, and an English version trained without real text reached 99.7 % and 98.9 % detection on synthetic benchmarks.

By Stig Hellemans, Tom Stroobants, Elyne Scheurwegs, Pieter Meysman, Philippe G. Jorens, Kris Laukens
Hugging Face Trending Papers
Sep 24

A Living Benchmark for Information Retrieval from Electronic Health Records

The paper introduces BRIE, a scalable framework that automatically creates question–answer pairs from longitudinal electronic health record notes, validated by nineteen clinicians. It offers a continuously maintainable benchmark for evaluating large language models in clinical settings, addressing limitations of manual, costly, and quickly outdated existing benchmarks. Experiments across nine LLMs and five inference strategies reveal that even state‑of‑the‑art systems often miss clinically important information, especially for synthesis‑heavy queries.

arXiv Computation and Language
4d ago

Beyond Single-shot Writing: Deep Research Agents are Unreliable at Multi-turn Report Revision

The paper introduces Mr Dre, an evaluation suite that tests Deep Research Agents (DRAs) on multi-turn report revision, a process more reflective of human research practices. It defines a unified long‑form report protocol covering comprehensiveness, factuality, and presentation, and includes a human‑verified feedback simulation pipeline. Analysis of five DRAs shows that while agents can address most user feedback, they regress on 16‑28% of previously covered content and citation quality, and over successive turns they disrupt unrelated content and fail to preserve earlier edits, with prompt engineering and dedicated subagents offering limited improvement.

By Bingsen Chen, Boyan Li, Ping Nie, Yuyu Zhang, Xi Ye, Chen Zhao
arXiv AI
Jul 8

Prompt-to-Paper: Agentic AI System for Bioinformatics

arXiv:2607. 05456v1 Announce Type: new Abstract: While recent advances in large language models have enabled end-to-end automated manuscript generation, existing systems suffer from three critical deficiencies: (i) generated claims are not deterministically grounded in verifiable literature, (ii) experimental results are frequently fabricated rather than executed, and (iii) there exists no standardized, multi-dimensional framework to assess whether AI-generated manuscripts meet the quality and rigor required for real-world publication.

By Ramsha Kamran, Maheera Amjad, Zartasha Mustansar, Arsalan Shaukat, Salma Sherbaz, Muhammad U. S. Khan