arXiv AI

CRISP -- Clustering-Based Redundancy-Reduced Instance Sampling for Pathology Case Representation and Retrieval

arXiv:2605. 24253v2 Announce Type: replace-cross Abstract: Digital pathology archives increasingly contain multiple whole-slide images (WSIs) per case, capturing spatially distinct tumour regions and reflecting intrinsic morphological heterogeneity.

arXiv AI

Jun 26

Reducing Redundancy in Whole-Slide Image Patching for Scalable Indexing and Retrieval

arXiv:2606. 26157v1 Announce Type: cross Abstract: The rapid growth of digital pathology has created an urgent need for efficient indexing and retrieval of whole slide images (WSIs).

By Jialiang Geng, Ghazal Alabtah, Saghir Alfasly, Wataru Uegami, H. R. Tizhoosh

rag

Hugging Face Trending Papers

Jul 21

PathAgentBench: Benchmarking Evidence-Seeking Vision-Language Models on Whole-Slide Pathology Image

Whole-slide image (WSI) diagnosis requires identifying diagnostically relevant regions, examining them across magnifications, and integrating multi-scale evidence. However, most existing pathology benchmarks evaluate models on pre-cropped patches or pre-extracted slide features, leaving their ability to acquire evidence directly from gigapixel WSIs largely untested.

llms agents diffusion multimodal benchmarks

arXiv AI

Jun 30

Data-Efficient Multimodal Alignment for Histopathology-based Molecular Prediction

arXiv:2606. 29949v1 Announce Type: cross Abstract: H&E-stained whole-slide images offer cohort-scale availability and rich spatial context but lack molecular specificity, whereas bulk RNA-seq provides transcriptome-wide resolution at high cost with limited archival availability.

By Dominik Winter, Dominik Vonficht, Lo\"ic Le Bescond, Christian Gebbe, Marco Rosati, Richard J. Chen, Markus Schick, Ross Stewart, Nicolas Brieu

llms fine-tuning multimodal safety

arXiv AI

Jul 22

PathAgentBench: Benchmarking Evidence-Seeking Vision-Language Models on Whole-Slide Pathology Image

arXiv:2607. 19261v1 Announce Type: cross Abstract: Whole-slide image (WSI) diagnosis requires identifying diagnostically relevant regions, examining them across magnifications, and integrating multi-scale evidence.

By Dankai Liao, Tianyi Zhang, Yufeng Wu, Xinyue Zhang, Qiaochu Xue, Zeyu Liu, Dachun Zhao, Linghan Cai, Yueming Jin

llms agents diffusion multimodal benchmarks

arXiv AI

Jun 11

Atlas H&E-TME: Scalable AI-Based Tissue Profiling at Expert Pathologist-Level Accuracy

arXiv:2606. 12346v1 Announce Type: cross Abstract: Hematoxylin and eosin (H&E) staining is the cornerstone of histopathology, yet scalable, quantitative analysis of H&E whole-slide images (WSIs) remains a central challenge in computational pathology.

By Kai Standvoss, Miriam H\"agele, Rosemarie Krupar, Julika Ribbat-Idel, Jennifer Altsch\"uler, Gerrit Erdmann, Hans Pinckaers, Evelyn Ramberger, Madleen Drinkwitz, \'Ad\'am N\'arai, Alexander M\"ollers, Katja Lingelbach, Sebastian Kons, Lukas H\"onig, Recepcan Adig\"uzel, Joana Bai\~ao, Alberto Megina Gonzalo, Marius Teodorescu, Marie-Lisa Eich, Paolo Chetta, Shakil Merchant, Verena Aumiller, Simon Schallenberg, Andrew Norgan, Klaus-Robert M\"uller, Lukas Ruff, Maximilian Alber, Frederick Klauschen

benchmarks

arXiv AI

Jun 8

Mitosis Detection in the Wild: Multi-Tumor and Context-Aware Generalization in the MIDOG 2025 Challenge

arXiv:2606. 07368v1 Announce Type: cross Abstract: Automated mitosis detection is a well-established task in computational pathology.

By Marc Aubreville, Jonas Ammeling, Sweta Banerjee, Viktoria Weiss, Taryn A. Donovan, Robert Klopfleisch, Jiaqi Lv, Shan E Ahmed Raza, Rapha\"el Bourgade, Thomas Walter, Yasemin Topuz, Song\"ul Varl{\i}, Charles-Antoine Collins-Fekete, Zhuoyan Shen, Navya Sri Kelam, Nitin Singhal, Christian Marzahl, Brian Napora, Tengyou Xu, Hongyan Gu, Mario Vento, Gennaro Percannella, Norbert Ropiak, Izabela Wasiak, Jie Xiao, Shaojun Liu, Seungho Choe, April Khademi, Vidushi Walia, Sujatha Kotte, Andrew Broad, Alex Wright, Guillaume Balezo, Esha Sadia Nasir, Mostafa Jahanifar, Yosuke Yamagishi, Shouhei Hanaoka, Mattia Sarno, Francesco Tortorella, Biwen Meng, Jingxin Liu, Sara Krauss, Daniel Hieber, Lavish Ramchandani, Dev Kumar Das, Mieko Ochi, Yuan Bae, Piotr Giedziun, Mateusz Maniewski, Vangala Govindakrishnan Saipradeep, Naveen Sivadasan, Leire Benito-Del-Valle, Adrian Galdran, Kaustubh Atey, Sameer Anand Jha, Adinath Dukre, Imran Razzak, Maxime W. Lafarge, Viktor H. Koelzer, Nils Porsche, Nikolas Stathonikos, Mitko Veta, Dominik Hirling, Zsanett Zs\'ofia Iv\'an, Peter Horvath, Katharina Breininger, Christof A. Bertram

benchmarks

arXiv Machine Learning

Jul 15

Auditing Data Leakage in Whole-Slide Image Multimodal Benchmarks

arXiv:2607. 12278v1 Announce Type: cross Abstract: Recent vision-language models (VLMs) for computational pathology report striking zero-shot performance on whole-slide image (WSI) visual question answering (VQA) benchmarks.

By Wenhao Zhang, Zhongliang Zhou, John Kang, Sheng Li

llms nlp multimodal benchmarks

arXiv Machine Learning

Jun 8

LRMIL: Efficient Low-Resolution Multiple Instance Learning via High-Resolution Knowledge Distillation for Whole Slide Image Classification

arXiv:2606. 06864v1 Announce Type: cross Abstract: Multiple instance learning (MIL) has become a standard paradigm for whole slide image (WSI) analysis in digital pathology, as it enables slide-level prediction without dense annotations.

By Yonghan Shin, Won-Ki Jeong

rag computer-vision efficiency benchmarks

arXiv AI

Jun 8

DaX: Learning General Pathology Representations Across Scales

arXiv:2606. 06983v1 Announce Type: cross Abstract: Computational pathology requires visual representations that transfer across diverse clinical endpoints and remain robust to variation in magnification, staining, scanner type, slide preparation, and input resolution.

By Bokai Zhao, Yiyang Zhang, Long Bai, Tai Ma, Hanqing Chao, Minfeng Xu

benchmarks

arXiv AI

Jun 9

SlideCheck: Guiding Self-Supervised Pretraining of Pathology Foundation Models via Dataset Distributions

arXiv:2606. 07590v1 Announce Type: cross Abstract: Pathology foundation models are pretrained on large streams of WSI-derived patches, while supervision during data construction is often slide-level, sparse, or heterogeneous.

By Mingyi He, Xinyi Guo, Xitong Ling, Weiming Chen, Jiawen Li, Lianghui Zhu, Minxi Ouyang, Mingxi Fu, Yizhi Wang, Tian Guan

arXiv AI

Aug 11

Simple Token-Efficient Vision-Language Model for Case-level Pathology Synoptic Report Generation

arXiv:2605. 30716v2 Announce Type: replace-cross Abstract: Generating clinically useful pathology reports for pathology cases from whole-slide images (WSIs) is challenging due to gigapixel resolution, long visual-token sequences, and the complexity of case-level reasoning, where a single case may contain multiple WSIs with heterogeneous tissues and ambiguous findings.

By Zhiyuan Yang, Jiahao Cheng, Vincent Quoc-Huy Trinh, Mahdi S. Hosseini

llms fine-tuning multimodal

arXiv AI

Jul 17

ReportMedSAM: Guiding Segmentation Through Radiology Reports

arXiv:2607. 14116v1 Announce Type: cross Abstract: Free-form radiology reports contain rich clinical descriptions, yet converting them for reliable segmentation remains challenging due to the inherent variability of natural language.

By Anghong Du, Theodoros N. Arvanitis, Colin Watts, Alejandro F. Frangi, Le Zhang

rag computer-vision multimodal

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