arXiv Machine Learning

Quantitative mapping from conventional MRI using self-supervised physics-guided deep learning: applications to a large-scale, clinically heterogeneous dataset

This study introduces a self‑supervised, physics‑guided deep‑learning framework that converts standard clinical T1‑, T2‑, and FLAIR MRIs into quantitative T1, T2, and proton‑density maps. Trained on 4,121 scan sessions from four different 3 T scanners over six years, the method produces maps whose white‑ and gray‑matter values fall within literature ranges and shows minimal variation across scanner hardware and acquisition protocols (coefficients of variation ≤ 1.1 %). Voxel‑wise reproducibility is high, with Pearson and concordance correlation coefficients above 0.82 for T1 and T2 and mean relative differences below 6 % for T2.

arXiv AI
Jun 12

BrainDINO: A Brain MRI Foundation Model for Generalizable Clinical Representation Learning

arXiv:2604. 27277v3 Announce Type: replace-cross Abstract: Brain MRI underpins a wide range of neuroscientific and clinical applications, yet most learning-based methods remain task-specific and require substantial labeled data.

By Yizhou Wu, Shansong Wang, Yuheng Li, Mojtaba Safari, Mingzhe Hu, Chih-Wei Chang, Harini Veeraraghavan, Xiaofeng Yang
arXiv AI
Jun 2

CoilDrop-MRI: Self-supervised physics-guided MRI reconstruction with coil dropout

arXiv:2606. 00100v1 Announce Type: cross Abstract: Self-supervised deep learning-based methods have shown great promise for accelerated magnetic resonance imaging (MRI) reconstruction, achieving high image quality without requiring fully sampled data for training.

By Tongxi Song, Ziyu Li, Zihan Li, Wen Zhong, Congyu Liao, Yang Yang, Hua Guo, Wenchuan Wu, Qiyuan Tian
arXiv Computer Vision
Aug 26

Single-Subject Multi-View MRI Super-Resolution via Implicit Neural Representations

The paper introduces SIMS-MRI, a self‑supervised framework that performs single‑subject multi‑view MRI super‑resolution using implicit neural representations. It processes anisotropic multi‑view scans without pre‑ or post‑processing, employing a multi‑resolution hash‑encoded representation and learned inter‑view alignment to produce isotropic reconstructions. The method is validated on simulated brain and clinical prostate MRI datasets, and the code will be publicly released.

By Heejong Kim, Abhishek Thanki, Roel van Herten, Daniel Margolis, Mert R Sabuncu
arXiv AI
Jul 23

PRIME-SVR: Physics-infoRmed Implicit Multi-Echo Slice-to-Volume Reconstruction for Fetal T2 mapping

arXiv:2607. 20136v1 Announce Type: cross Abstract: Slice-to-volume reconstruction (SVR) is the standard method for obtaining high-resolution (HR) 3D fetal brain volumes from motion-corrupted 2D MRI slice stacks acquired in multiple orientations.

By Busra Bulut, Maik Dannecker, Thomas Sanchez, Sara Neves Silva, Steven Jia, Jean-Baptiste Ledoux, Leo Pomar, Joanna Sichitiu, Yvan Gomez, Meriam Koob, Vincent Dunet, Maria Deprez, Guillaume Auzias, Francois Rousseau, Jana Hutter, Daniel Rueckert, Meritxell Bach Cuadra
arXiv Computer Vision
3d ago

The MYOSAIQ Challenge: Myocardial Segmentation with Automated Infarct Quantification

arXiv:2608.29246v1 Announce Type: cross Abstract: Late gadolinium enhancement (LGE) cardiac magnetic resonance (MR) imaging is the modality of choice to assess myocardial infarction (MI) lesions. Now...

By Olivier Bernard, William A. Romero R., Cyprien Bouton, Celia Goujat, Hang Jung Ling, Pierre-Marc Jodoin, Fumin Guo, Calder Sheagren, Graham Wright, Abdul Qayyum, Moona Mazher, Steven A. Niederer, Hairui Wang, Xiaomei Wu, Franz Thaler, Gernot Plank, Martin Urschler, Ricardo M. Rosales, Esther Pueyo, Nicolas Duchateau, Frederic Cervenansky, Patrick Clarysse, Loic Belle, Thomas Bochaton, Nathan Mewton, Magalie Viallon, Pierre Croisille
arXiv Machine Learning
1d ago

Enhancing brain age estimation with structural MRI and synthesized cerebral blood volume maps

The study presents a multimodal BrainAGE framework that fuses structural T1-weighted MRI with DeepCBV maps—vascular information synthesized from non‑contrast MRI—to estimate brain age more accurately. Using two separate 3D convolutional neural networks, the combined model achieved a mean absolute error of 3.95 years on cognitively normal controls, outperforming single‑modality models. Saliency analyses showed MRI highlighted white matter and cortical atrophy, while DeepCBV emphasized vascular‑rich regions, and the integrated approach revealed stronger differentiation between stable and progressive MCI, indicating sensitivity to early vascular changes.

By Jordan Jomsky, Zongyu Li, Kay C. Igwe, Yiren Zhang, Max Lashley, Tal Nuriel, Andrew Laine, Scott A. Small, Jia Guo, for the Frontotemporal Lobar Degeneration Neuroimaging Initiative, for the Alzheimer's Disease Neuroimaging Initiative
Hugging Face Trending Papers
Jul 7

PhyMRI-SR: Toward Physics-Aware MRI Image Super-Resolution

Magnetic resonance imaging (MRI) super-resolution is vital for improving diagnostic accessibility, yet most methods treat it as a deterministic mapping from a fixed low-resolution input to a high-resolution target. This overlooks a key property of MRI acquisition physics: spatial resolution and signal-to-noise ratio (SNR) are inherently coupled, making any given low-resolution scan merely one of many possible realizations under varying acquisition trade-offs.

arXiv AI
Jun 15

Catching magnetic resonance imaging outliers in artificial intelligence-supported radiotherapy workflows: unsupervised detection and localization of image anomalies using deep learning

arXiv:2605. 24609v2 Announce Type: replace-cross Abstract: Artificial intelligence is increasingly integrated into radiotherapy workflows, yet such pipelines remain vulnerable to out-of-distribution image data that may introduce unexpected behavior in clinical tasks.

By Mustafa Kadhim, Viktor Rogowski, Emilia Persson, Camila Gonzalez, Andr\'e Haraldsson, Sofie Ceberg, Mikael Nilsson, Malin K\"ugele, Sven B\"ack, Christian Jamtheim Gustafsson
arXiv AI
Jun 9

Comparative evaluation of training strategies using partially labelled datasets for segmentation of white matter hyperintensities and stroke lesions in FLAIR MRI

arXiv:2601. 20503v2 Announce Type: replace-cross Abstract: White matter hyperintensities (WMH) and ischaemic stroke lesions (ISL) are key imaging biomarkers of cerebral small vessel disease (SVD) detectable on magnetic resonance imaging (MRI).

By Jesse Phitidis, Alison Q. Smithard, William N. Whiteley, Joanna M. Wardlaw, Miguel O. Bernabeu, Maria Vald\'es Hern\'andez