arXiv Machine Learning By Alex Finkelstein, Ron Moneta, Or Zohar, Michal Rivlin, Moritz Zaiss, Dinora Friedmann Morvinski, Or Perlman

Multiparameter Uncertainty Mapping in Quantitative Molecular MRI using a Physics-Structured Variational Autoencoder (PS-VAE)

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arXiv Machine Learning
Aug 28

Quantitative mapping from conventional MRI using self-supervised physics-guided deep learning: applications to a large-scale, clinically heterogeneous dataset

This study introduces a self‑supervised, physics‑guided deep‑learning framework that converts standard clinical T1‑, T2‑, and FLAIR MRIs into quantitative T1, T2, and proton‑density maps. Trained on 4,121 scan sessions from four different 3 T scanners over six years, the method produces maps whose white‑ and gray‑matter values fall within literature ranges and shows minimal variation across scanner hardware and acquisition protocols (coefficients of variation ≤ 1.1 %). Voxel‑wise reproducibility is high, with Pearson and concordance correlation coefficients above 0.82 for T1 and T2 and mean relative differences below 6 % for T2.

By Jelmer van Lune, Stefano Mandija, Oscar van der Heide, Matteo Maspero, Martin B. Schilder, Jan Willem Dankbaar, Cornelis A. T. van den Berg, Alessandro Sbrizzi
Hugging Face Trending Papers
Jul 7

PhyMRI-SR: Toward Physics-Aware MRI Image Super-Resolution

Magnetic resonance imaging (MRI) super-resolution is vital for improving diagnostic accessibility, yet most methods treat it as a deterministic mapping from a fixed low-resolution input to a high-resolution target. This overlooks a key property of MRI acquisition physics: spatial resolution and signal-to-noise ratio (SNR) are inherently coupled, making any given low-resolution scan merely one of many possible realizations under varying acquisition trade-offs.

arXiv Computer Vision
6d ago

Retrospective macromolecular pool fraction mapping from conventional clinical MRI: a physics-guided self-supervised deep learning framework

The study introduces a physics‑guided, self‑supervised deep learning framework that estimates macromolecular pool fraction (MPF) maps directly from conventional clinical brain MRI sequences (T1‑, T2‑, and FLAIR) without requiring specialized quantitative magnetization transfer scans. By embedding an analytical two‑pool magnetization transfer model and conditioning on acquisition parameters, the method was trained on 7,705 multisite, multivendor MRI sessions and achieved consistent MPF values across vendors and protocols, with a 35.6% reduction in lesions of demyelinating disease compared to normal‑appearing white matter. Cross‑protocol validation in a healthy volunteer showed a mean voxel‑wise absolute difference of 7.7% and a concordance correlation coefficient of 0.888, demonstrating robust cross‑protocol performance.

By Jelmer van Lune, Miha Fuderer, Oscar van der Heide, Matteo Maspero, Martin B. Schilder, Jan Willem Dankbaar, Stefano Mandija, Alessandro Sbrizzi