The paper introduces DiffPT, a diffusion‑based pretraining method for classifier backbones aimed at improving performance when training data is scarce. Experiments on time‑series, natural image, and medical imaging datasets show that DiffPT outperforms many self‑supervised baselines, especially in low‑data regimes for medical and time‑series tasks. While contrastive pretraining remains superior on CIFAR‑10 and Tiny ImageNet, DiffPT offers a simple and effective alternative across diverse modalities.
By Qinyu Li, Yee Whye Teh, Chris Holmes, Joel Jaskari
arXiv:2603. 03710v3 Announce Type: replace-cross Abstract: Zero-shot MRI reconstruction relies on generative priors, but single-modality unconditional priors produce hallucinations under severe ill-posedness.
By Seunghoi Kim, Chen Jin, Henry F. J. Tregidgo, Matteo Figini, Daniel C. Alexander
arXiv:2605. 23995v4 Announce Type: replace-cross Abstract: Self-supervised learning (SSL) is increasingly used in medical image analysis to reduce dependence on costly expert annotations by learning transferable representations from unlabeled data.
By Chathura Wimalasiri, Kishor Nandakishor, Marimuthu Palaniswami
arXiv:2601.17228v2 Announce Type: replace
Abstract: Deep learning models in computational pathology often fail to generalize across cohorts and institutions due to domain shift. Existing approaches e...
By Tengyue Zhang, Ruiwen Ding, Luoting Zhuang, Yuxiao Wu, Erika F. Rodriguez, William Hsu
arXiv:2602.14512v3 Announce Type: replace
Abstract: Autoregressive pretraining has been key to the scalability of large language models, yet medical generative foundation models remain predominantly...
By Zhicheng He, Yunpeng Zhao, Junde Wu, Ziwei Niu, Ziyue Wang, Bohan Li, Zijun Li, Lanfen Lin, Nan Liu, Yueming Jin
arXiv:2607. 03103v1 Announce Type: cross Abstract: Clinical cardiac imaging pipelines currently deploy separate models for each dataset and modality, incurring redundant training costs and precluding knowledge sharing across anatomically related tasks.
By Jiahao Liu, Hang Wei, Shuai Wu
Eddeep is a deep‑learning framework designed to correct eddy‑current distortions in diffusion MRI. It uses a two‑stage approach: first, a supervised image‑translation network standardises image contrast, and second, an unsupervised registration network estimates distortion and motion parameters in a single forward pass. Trained on UK Biobank data, Eddeep achieves correction quality comparable to FSL Eddy while dramatically reducing inference time.
By Antoine Legouhy, Ross Callaghan, Yuchuan Qiao, Whitney Stee, Philippe Peigneux, Hojjat Azadbakht, Hui Zhang
arXiv:2606. 09953v1 Announce Type: cross Abstract: Head computed tomography (CT) typically uses sub-millimeter in-plane resolution but 2-5 mm through-plane spacing, creating substantial anisotropy that degrades multiplanar reconstructions, volumetric measurements such as hematoma volume estimation, and downstream algorithms that assume near-isotropic voxels.
By Luis Cort\'es Ferre, Miguel A. Guti\'errez-Naranjo, Marcin Balcerzyk
arXiv:2606.13315v2 Announce Type: replace
Abstract: MRI self-supervised learning (SSL) has largely emphasized segmentation and dense prediction, while controlled studies of how alternative pretrainin...
By Esra Erg\"un, Hersh Chandarana, Dan Sodickson, Gozde Unal
nnFoundation introduces complementary convolutional and transformer-based 3D foundation models for radiology, trained on 2.1 million CT, MRI, and PET volumes from 125 datasets. The models are evaluated on 108 tasks—including segmentation, detection, classification, report generation, and image retrieval—under domain shift, low-data, and low-compute scenarios, consistently outperforming prior 3D foundation models and training from scratch. Performance varies by task type, with convolutional models excelling at spatially localized tasks and transformer models at global semantic reasoning, and dynamic alignment with dataset characteristics further enhances transferability.
By Constantin Ulrich Harsy, Tassilo Wald, Karol Gotkowski, Yannick Kirchhoff, Marcel Knopp, Maximilian Rokuss, Elisa Stegmeier, Philipp Schader, Dasha Trofimova, Raphael Stock, Kim-Celine Kahl, Stephen Schaumann, Selen Erkan, David Zimmerer, Stefan Denner, Moritz Langenberg, Sebastian Ziegler, Katharina Eckstein, Maximilian Fischer, Jonathan Suprijadi, B\'alint Kov\'acs, Benjamin Hamm, Anand Deshpande, Dimitrios Bounias, Nico Disch, Shuhan Xiao, Jessica K\"achele, Jan Sellner, Rajesh Baidya, Jeremias Traub, Lars Kr\"amer, Maximilian Zenk, Tim R\"adsch, Stefan Dvoretskii, Robin Peretzke, Jonathan Deissler, Alexandra Ertl, Partha Ghosh, Kris Dreher, Stefan Dinkelacker, Annika Reinke, Evangelia Christodoulou, Numan Saeed, Yoland Savriama, Santiago Estrada, David K\"ugler, Laura Alexandra Daza Barragan, Cristina Isabel Gonzalez Osorio, Jan Peeken, Michael Baumgartner, Marvin Teichmann, Guillaume Chabin, Matthias Kirchler, Valentin Koch, for the ALFA study, Markus Hohenhaus, Dimitri Koslov, Nina Decker, Mohammad Yaqub, Arnd Heuser, Martin Reuter, Julia A. Schnabel, Tobias Heimann, Florin Ghesu, Paul Brachmann, Claus P. Heu{\ss}el, Alexander Radbruch, Gianluca Brugnara, Aditya Rastogi, Martha Foltyn-Dumitru, Heinz-Peter Schlemmer, Ignaz Reicht, Julius C. Holzschuh, Michael Bach, Bram Stieltjes, Kai Schlamp, Lena Maier-Hein, Marco Nolden, Ralf Floca, Paul F. J\"ager, Philipp Vollmuth, Fabian Isensee, Klaus H. Maier-Hein
arXiv:2608. 03990v1 Announce Type: new Abstract: Synthetic histopathology image generation has emerged as an approach that may address data scarcity in computational pathology, yet current evaluation methodologies may not fully assess synthetic data quality for medical applications.
By Seyed Kahaki, Shijie Li, Weijie Chen, Nicholas Petrick
arXiv:2607. 02998v2 Announce Type: replace-cross Abstract: Controllable generative models of 3D medical images can synthesize volumes with specified clinical attributes, but this demands samples that are simultaneously high-fidelity, natively 3D, and faithful to the requested conditioning.
By Max Van Puyvelde, Halil Ibrahim Gulluk, Wim Van Criekinge, Olivier Gevaert