arXiv AI

Prospective multi-pathogen disease forecasting using autonomous LLM-guided tree search

The paper introduces Empirical Research Assistance (ERA), an autonomous system that employs Large Language Model‑guided tree search to create, evaluate, and refine executable forecasting software for infectious diseases. In a real‑time evaluation during the 2025‑26 U.S. respiratory season, ERA produced diverse models for influenza, COVID‑19, and RSV, and an ensemble of these models outperformed the CDC’s gold‑standard forecast ensembles across all three pathogens. ERA also demonstrated robustness in data‑scarce RSV scenarios and showed that higher‑tier language models and specific optimization metrics can improve forecast accuracy.

arXiv Machine Learning
Aug 27

Planetary Prediction Engine: Autonomous Geospatial Prediction via Intelligent Data Selection and Foundation Model Embeddings

The Planetary Prediction Engine (PPE) is an autonomous AI system that transforms natural-language queries into end-to-end geospatial predictions. It automatically retrieves and fuses multimodal datasets from open-web and Earth observation sources, incorporates foundation model embeddings, and searches task‑specific model families with overfitting safeguards. Across multiple domains, PPE outperforms state‑of‑the‑art baselines, improving regression metrics for CDC health indicators, FEMA risk indices, and the Social Vulnerability Index, doubling accuracy for Nigerian food security indicators, and achieving higher recall in Ebola outbreak nowcasting.

By Evelyn Ma, Rama Kumar Pasumarthi, Kishwar Shafin, Mandar Sharma, Mimi Sun, Hamed Sadeghi, Dav M. Ebengo, Mbulayi Onesime, Rouslan Solomakhin, John Wamburu, William Ogallo, Aisha Walcott-Bryant, Sanxing Chen, Arbaaz Muslim, Yael Mayer, Ronald Ho, Roy Lee, Ruth Alcantara, Abdoulaye Diack, Monica Bharel, Lambert Rosique, Jeremy Amez-Droz, Christopher Haire, James Manyika, Yossi Matias, Niv Efron, Gautam Prasad, Shravya Shetty
arXiv Machine Learning
Sep 15

Generative diffusion models for spatiotemporal influenza forecasting

The paper introduces Influpaint, a denoising diffusion probabilistic model adapted for forecasting influenza incidence. By representing influenza seasons as spatiotemporal images and training on a hybrid dataset of surveillance and simulated trajectories, the model learns a rich distribution of disease dynamics and performs forecasting as a conditional generation task. In retrospective and real‑time evaluations, Influpaint produces realistic, diverse epidemic trajectories and achieves forecast accuracy competitive with leading ensemble methods, especially when trained with 30% surveillance and 70% simulated data.

By Joseph Lemaitre, Justin Lessler