arXiv AI
Sep 28

Combining General and Domain-Specific Pretext Tasks for Brain MR Image Segmentation

The paper investigates combining a domain‑specific self‑supervised task—voxel‑level brain age prediction—with a general task—image inpainting—to pretrain models for brain MRI segmentation. A multitask pretraining framework jointly optimizes both objectives, yielding representations that outperform single‑task pretraining and training from scratch on three segmentation benchmarks (multiple sclerosis lesions, ischemic stroke lesions, and cortical structures). The study demonstrates that integrating domain‑specific and general self‑supervised tasks benefits the development of generalizable neuroimaging foundation models.

By Tasneem Nasser, Susanne Schmid, Roberto Souza, Naser El-Sheimy
arXiv AI
Sep 21

Diagnostic-Guided Longitudinal Modeling for Forecasting Retinal Atrophy Progression

The study proposes a diagnostic-guided approach to choose between stochastic and deterministic longitudinal imaging models based on whether inter-visit changes are driven by disease progression or acquisition variability. Applied to a large, heterogeneous Optos fundus autofluorescence archive, the diagnostic revealed weak time-dependent changes and limited benefit from stochastic models, leading to the development of the deterministic Temporal Retinal U‑Net (TRU). TRU outperformed other classical and deep‑learning comparators on image‑level and eye‑specific progression metrics across held‑out and independent zero‑shot transfer cohorts, though with slightly lower precision in a smaller cross‑vendor cohort.

By Liyin Chen, Souvick Mukherjee, Ines Maria De Carvalho Lains, Nazlee Zebardast, Mengyu Wang, Tobias Elze, Jason I. Comander
arXiv Machine Learning
Oct 7

Stochastic Siamese MAE Pretraining for Longitudinal Medical Images

arXiv:2512.23441v2 Announce Type: replace Abstract: Temporally aware image representations are crucial for capturing disease progression in 3D volumes of longitudinal medical datasets. However, recen...

By Taha Emre, Arunava Chakravarty, Thomas Pinetz, Dmitrii Lachinov, Martin J. Menten, Hendrik Scholl, Sobha Sivaprasad, Daniel Rueckert, Andrew Lotery, Stefan Sacu, Ursula Schmidt-Erfurth, Hrvoje Bogunovi\'c