The paper introduces a Geometric-to-Semantic Spherical Transfer Learning framework for labeling cortical sulci on brain surfaces. It first pre‑trains a spherical encoder on ~30,000 unlabeled UK Biobank subjects using only curvature and depth, then injects sulcal fundi lines as a soft‑initialized Topological Prior Injector to bridge the geometric‑semantic gap. Experiments show the method surpasses fully supervised baselines, achieving a mean Dice score of 0.77 and delivering the largest gains on variable and tertiary sulci.
arXiv:2610. 13915v1 Announce Type: new Abstract: Self-supervised learning on 3D medical images commonly relies on random sub-volume sampling during pretraining.
arXiv:2609.31204v1 Announce Type: cross Abstract: Recent fMRI foundation models differ substantially in the spatial scale at which they represent brain activity. ROI- and connectivity-based models ar...
Atelier is a self‑supervised framework that uses a transformer‑based hypernetwork to generate implicit neural representations (INRs) for cryo‑EM maps, enabling efficient, scale‑agnostic, coordinate‑conditioned feature extraction. Trained on 5,439 maps from the Electron Microscopy Data Bank, the pretrained INR provides continuous local feature fields that can be used as auxiliary channels for a 3D nested U‑Net, improving voxel‑level property prediction across eight tasks compared to a volume‑only baseline. The approach demonstrates that amortized INRs can serve as a geometry‑aware primitive for large‑scale cryo‑EM analysis.
arXiv:2608. 07340v1 Announce Type: cross Abstract: Registration-based Few-shot medical image segmentation (RFMIS) aims to generate pseudo-labels for unlabeled images by warping a labeled image through registration.
The growing number of medical vision foundation models highlights the need for effective model selection. However, mainstream selection methods rely on exhaustive fine-tuning, which is computationally expensive.
arXiv:2606. 15837v1 Announce Type: cross Abstract: Deep neural networks (DNNs) frequently fail to generalize to out-of-distribution (OOD) medical images because of variations in scanners and acquisition protocols.
FiberGeoText (FGT) is a vision‑language model that clusters short‑range superficial white matter streamlines from ultra‑high‑resolution diffusion MRI into population‑level groups. It jointly encodes each streamline’s 3‑D trajectory, cortical anatomical context (via text from multiple parcellation schemes), and shape, using a pretrained large language model to unify heterogeneous anatomical descriptions. Evaluations on 0.76 mm diffusion data show that FGT outperforms state‑of‑the‑art methods in cortical parcel coherence, shape consistency, cluster‑size consistency, and cross‑subject correspondence, and it generalizes well to unseen subjects, recovering 96.7 % of learned clusters.
arXiv:2606. 09893v1 Announce Type: cross Abstract: Diffusion MRI (dMRI) tractography is the only noninvasive approach for mapping white-matter pathways in the living human brain.
arXiv:2606. 04772v1 Announce Type: cross Abstract: Understanding the relationship between deep visual representations and the human visual system is a fundamental challenge in computational neuroscience.
arXiv:2605. 18419v2 Announce Type: replace-cross Abstract: Vision-language models (VLMs) can couple visual perception with open-ended clinical reasoning, making them attractive for computational histopathology.
The paper investigates combining a domain‑specific self‑supervised task—voxel‑level brain age prediction—with a general task—image inpainting—to pretrain models for brain MRI segmentation. A multitask pretraining framework jointly optimizes both objectives, yielding representations that outperform single‑task pretraining and training from scratch on three segmentation benchmarks (multiple sclerosis lesions, ischemic stroke lesions, and cortical structures). The study demonstrates that integrating domain‑specific and general self‑supervised tasks benefits the development of generalizable neuroimaging foundation models.
arXiv:2610.28555v1 Announce Type: cross Abstract: Statistical learning in high dimensions suffers from the curse of dimensionality. Fortunately, many functions of practical interest are compositional...