arXiv Computer Vision

On the Role of MRI Sequences in Cross-Dataset Generalization for Brain Tumor Segmentation

arXiv Computer Vision
Sep 22

VGG16-MCA UNet: Whole-Tumor Segmentation in 2D FLAIR MRI with Decoder-Side Channel Attention

VGG16-MCA UNet is a hybrid neural network that combines an ImageNet‑pretrained VGG16 encoder with a decoder enhanced by a Multi‑Channel Attention module, trained using Focal Tversky loss to address class imbalance. The model was evaluated as a 2‑D, FLAIR‑only whole‑tumor segmenter on BraTS 2020 and LGG datasets, achieving a pixel‑level Dice of 95.10 % on BraTS and 88.32 % on LGG in a 5‑fold cross‑validation setting. Inference time is 66.32 ms per 256×256 slice on a single RTX 2060, only slightly slower than a VGG16‑UNet without attention. whyItMatters":"The study provides a reproducible 2‑D FLAIR baseline for whole‑tumor segmentation, demonstrating high Dice scores and detailed reporting of training and evaluation protocols."

By Shubham Gajjar, Deep Joshi, Avi Poptani, Vishal Barot
arXiv Computer Vision
Aug 25

Tumor-aware augmentation with task-guided attention analysis improves rectal cancer segmentation from magnetic resonance images

arXiv:2605.05522v3 Announce Type: replace-cross Abstract: Although self-supervised pretraining is expected to learn broadly transferable representations, its effectiveness across imaging modalities s...

By Aneesh Rangnekar, Joao Miranda, Natally Horvat, Stephanie Chahwan, Samir Alrayess, Aditya Apte, Aditi Iyer, Eve LoCastro, Revathi Ravella, Marc J Gollub, Iva Petkovska, Jesse Joshua Smith, Paul Romesser, Julio Garcia-Aguilar, Harini Veeraraghavan, Joseph O Deasy
arXiv Machine Learning
Sep 16

NeuroTS-Net: Multi-Class Semantic Segmentation of Pediatric Brain Tumors in Multi-Modal MRI

NeuroTS-Net is a 3‑D encoder‑decoder CNN designed for multi‑class semantic segmentation of pediatric brain tumors in multi‑modal MRI. It uses a dual‑scale raw‑detail stream, adaptive low‑resolution context selection, and detail‑preserving multipath downsampling to maintain fine intensity and boundary information while modeling broader tumor context. Trained on the BraTS 2026 pediatric dataset, it outperformed nnU‑Net and MedNeXt, achieving Dice scores of 0.938/0.937 on internal validation and 0.927/0.926 on the official challenge set.

By Darius Peteleaza, Razvan-Gabriel Dumitru, Bogdan Neamtu, Arpad Gellert, Mariana Sandu, Claudiu Matei
arXiv Computer Vision
Sep 3

Generalizable Brain Tumor Segmentation with Self-Training and Tumor-Aware Deformations

The paper introduces a method for generalizable brain tumor segmentation in the BraTS 2026 Challenge. It builds on the nnU-Net framework with a large residual encoder, adding semi‑supervised learning via pseudo‑labels and a tumor‑aware deformable augmentation that locally deforms lesions while preserving surrounding anatomy. The approach improves Dice and NSD scores across all tumor regions compared to labeled‑only baselines, demonstrating the complementary benefits of self‑training and the proposed augmentation.

By Henrique Zan Grande, Jeovane Honorio Alves, Rayson Laroca, Andre Gustavo Hochuli
arXiv Computer Vision
Aug 26

crossMoDA Challenge: Evolution of Cross-Modality Domain Adaptation Techniques for Vestibular Schwannoma and Cochlea Segmentation from 2021 to 2023

arXiv:2506.12006v4 Announce Type: replace-cross Abstract: The cross-Modality Domain Adaptation (crossMoDA) challenge series, initiated in 2021 in conjunction with the International Conference on Medi...

By Navodini Wijethilake, Reuben Dorent, Marina Ivory, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Mohamed Okasha, Anna Oviedova, Hexin Dong, Bogyeong Kang, Guillaume Sall\'e, Luyi Han, Ziyuan Zhao, Han Liu, Yubo Fan, Tao Yang, Shahad Hardan, Hussain Alasmawi, Santosh Sanjeev, Yuzhou Zhuang, Satoshi Kondo, Maria Baldeon Calisto, Shaikh Muhammad Uzair Noman, Cancan Chen, Ipek Oguz, Rongguo Zhang, Mina Rezaei, Susana K. Lai-Yuen, Satoshi Kasai, Yunzhi Huang, Chih-Cheng Hung, Mohammad Yaqub, Lisheng Wang, Benoit M. Dawant, Cuntai Guan, Ritse Mann, Vincent Jaouen, Tae-Eui Kam, Li Zhang, Jonathan Shapey, Tom Vercauteren
arXiv AI
Jun 12

BrainDINO: A Brain MRI Foundation Model for Generalizable Clinical Representation Learning

arXiv:2604. 27277v3 Announce Type: replace-cross Abstract: Brain MRI underpins a wide range of neuroscientific and clinical applications, yet most learning-based methods remain task-specific and require substantial labeled data.

By Yizhou Wu, Shansong Wang, Yuheng Li, Mojtaba Safari, Mingzhe Hu, Chih-Wei Chang, Harini Veeraraghavan, Xiaofeng Yang