arXiv Computer Vision

Generalizable Brain Tumor Segmentation with Self-Training and Tumor-Aware Deformations

The paper introduces a method for generalizable brain tumor segmentation in the BraTS 2026 Challenge. It builds on the nnU-Net framework with a large residual encoder, adding semi‑supervised learning via pseudo‑labels and a tumor‑aware deformable augmentation that locally deforms lesions while preserving surrounding anatomy. The approach improves Dice and NSD scores across all tumor regions compared to labeled‑only baselines, demonstrating the complementary benefits of self‑training and the proposed augmentation.

arXiv Machine Learning
Sep 16

NeuroTS-Net: Multi-Class Semantic Segmentation of Pediatric Brain Tumors in Multi-Modal MRI

NeuroTS-Net is a 3‑D encoder‑decoder CNN designed for multi‑class semantic segmentation of pediatric brain tumors in multi‑modal MRI. It uses a dual‑scale raw‑detail stream, adaptive low‑resolution context selection, and detail‑preserving multipath downsampling to maintain fine intensity and boundary information while modeling broader tumor context. Trained on the BraTS 2026 pediatric dataset, it outperformed nnU‑Net and MedNeXt, achieving Dice scores of 0.938/0.937 on internal validation and 0.927/0.926 on the official challenge set.

By Darius Peteleaza, Razvan-Gabriel Dumitru, Bogdan Neamtu, Arpad Gellert, Mariana Sandu, Claudiu Matei
arXiv Computer Vision
Sep 22

VGG16-MCA UNet: Whole-Tumor Segmentation in 2D FLAIR MRI with Decoder-Side Channel Attention

VGG16-MCA UNet is a hybrid neural network that combines an ImageNet‑pretrained VGG16 encoder with a decoder enhanced by a Multi‑Channel Attention module, trained using Focal Tversky loss to address class imbalance. The model was evaluated as a 2‑D, FLAIR‑only whole‑tumor segmenter on BraTS 2020 and LGG datasets, achieving a pixel‑level Dice of 95.10 % on BraTS and 88.32 % on LGG in a 5‑fold cross‑validation setting. Inference time is 66.32 ms per 256×256 slice on a single RTX 2060, only slightly slower than a VGG16‑UNet without attention. whyItMatters":"The study provides a reproducible 2‑D FLAIR baseline for whole‑tumor segmentation, demonstrating high Dice scores and detailed reporting of training and evaluation protocols."

By Shubham Gajjar, Deep Joshi, Avi Poptani, Vishal Barot
arXiv Computer Vision
Aug 21

MOSAIC: Modality-agnostic Spectral Alignment for Federated Image-level Weakly Supervised Tumor Segmentation under Client-specific Missing Modalities

arXiv:2608. 19788v1 Announce Type: cross Abstract: Trustworthy multimodal fusion in clinical settings requires handling incomplete and heterogeneous modality subsets across institutions, where privacy constraints prohibit centralized data sharing.

By Tarun Kumar Garg, Vaanathi Sundaresan
arXiv Computer Vision
Sep 15

Assessing nnU-Net Generalization across Brain Tumor Populations in BraTS-GoAT 2026

arXiv:2609.15524v1 Announce Type: new Abstract: BraTS-GoAT evaluates tumor segmentation across heterogeneous populations. We trained a conventional 3D nnU-Net on 1,351 labeled cases using five-fold c...

By Tristan Kirscher (ICube, Institut Strauss), Vivian Metzger (Institut Strauss), Philippe Meyer (Institut Strauss, ICube), Xavier Coubez (Institut Strauss, ICube)
arXiv AI
Jun 12

BrainDINO: A Brain MRI Foundation Model for Generalizable Clinical Representation Learning

arXiv:2604. 27277v3 Announce Type: replace-cross Abstract: Brain MRI underpins a wide range of neuroscientific and clinical applications, yet most learning-based methods remain task-specific and require substantial labeled data.

By Yizhou Wu, Shansong Wang, Yuheng Li, Mojtaba Safari, Mingzhe Hu, Chih-Wei Chang, Harini Veeraraghavan, Xiaofeng Yang
arXiv Computer Vision
Sep 25

Lightweight Vision Transformer-Based U-Net for Brain Tumor Segmentation from MRI

The paper introduces a lightweight Vision Transformer‑based U‑Net for brain tumor segmentation from MRI, combining U‑Net’s hierarchical feature extraction with a compact ViT bottleneck to capture both local and global context. With only 2.6 million trainable parameters, the model achieves a mean Intersection over Union of 0.8100 and a Dice score of 0.8446 on the TCGA LGG dataset, surpassing the baseline U‑Net by 3.75% and 3.15% respectively. Extensive quantitative and qualitative analyses, including confusion matrices, precision‑recall curves, and tumor size dependency studies, demonstrate the method’s effectiveness and robustness.

By Sheekar Banerjee, Md. Srabon Chowdhury, Md. Mahbub Hasan Akash, Ishtiak Al Mamoon
arXiv AI
Oct 1

Colorectal Cancer Segmentation with Adaptive Augmentation and Multi-Resolution Ensemble Models

The paper presents an automated segmentation pipeline for whole‑slide histopathology images of colorectal cancer, labeling tumor grades 1‑3 and normal mucosa. It employs dense prediction transformers with multiple encoder backbones, overlapping patches, test‑time augmentation, and an adaptive augmentation policy guided by large language models. The approach, combined with soft‑voting ensembles and post‑processing refinements, raises the F1 score from 62.92 to 69.84 on a colorectal cancer grade dataset.

By \"Umit Mert \c{C}a\u{g}lar, Alptekin Temizel