arXiv AI

RetiSEM: Generalising Causal Models for Fragmented Biomedical Data

arXiv:2606. 24488v1 Announce Type: cross Abstract: Learning causal models from fragmented biomedical data is challenging because clinical, molecular, and imaging variables are often incomplete or not jointly observed.

arXiv AI
Jul 16

Partially Observed Structural Causal Models

arXiv:2605. 03268v2 Announce Type: replace-cross Abstract: Here we introduce Partially Observed Structural Causal Models (POSCMs) as an extension of structural causal models (SCMs) to settings where upstream contexts co-determine both the interaction structure and downstream mechanisms on observed variables.

By Turan Orujlu, Jordan Matelsky, Martin V. Butz, Charley M. Wu, Konrad P. Kording
arXiv Machine Learning
Jun 9

Causal Representation Learning from Network Data

arXiv:2509. 01916v2 Announce Type: replace Abstract: Causal disentanglement from soft interventions is identifiable under the assumptions of linear interventional faithfulness and availability of both observational and interventional data.

By Jifan Zhang, Michelle M. Li, Elena Zheleva
arXiv AI
Jul 14

CDFM: Towards a General-Purpose Causal Discovery Foundation Model

arXiv:2607. 11508v1 Announce Type: cross Abstract: Causal discovery, the process of recovering underlying causal structures from observational data, is a fundamental pursuit across scientific disciplines.

By Jie Qiao, Ruichu Cai, Zijian Li, Weilin Chen, Pengfei Hua, Boyan Xu, Zhengming Chen, Zhifeng Hao, Peng Cui
arXiv Machine Learning
Jun 18

Artemis: Anatomy-Resolved inTervention for Eliminating Multimodal NeuroImage confounderS

arXiv:2606. 18287v1 Announce Type: new Abstract: Multimodal neuroimaging, integrating functional connectivity from fMRI and structural connectivity from DTI, enables non-invasive analysis of brain networks using graph neural networks.

By Siyuan Dai, Yang Du, Kun Zhao, Zhusuyi Chen, Heng Huang, Paul Thompson, Chao Shi, Haoteng Tang, Liang Zhan
arXiv AI
Aug 11

Human-Guided Causal Knowledge Injection for Virtual Cells

arXiv:2608. 08430v1 Announce Type: cross Abstract: Virtual cells employ machine learning models to simulate and predict cellular behaviors, serving as a critical computational framework for investigating health and disease.

By Pengcheng Wang, Changjian Chen, Zhuo Tang, You Wu, Long Wang, Feng Yu, Kenli Li
arXiv Machine Learning
Jun 26

Use What You Know: Causal Foundation Models with Partial Graphs

arXiv:2602. 14972v2 Announce Type: replace Abstract: Estimating causal quantities traditionally relies on bespoke estimators tailored to specific assumptions.

By Arik Reuter, Anish Dhir, Cristiana Diaconu, Jake Robertson, Ole Ossen, Frank Hutter, Adrian Weller, Mark van der Wilk, Bernhard Sch\"olkopf