The paper investigates combining a domain‑specific self‑supervised task—voxel‑level brain age prediction—with a general task—image inpainting—to pretrain models for brain MRI segmentation. A multitask pretraining framework jointly optimizes both objectives, yielding representations that outperform single‑task pretraining and training from scratch on three segmentation benchmarks (multiple sclerosis lesions, ischemic stroke lesions, and cortical structures). The study demonstrates that integrating domain‑specific and general self‑supervised tasks benefits the development of generalizable neuroimaging foundation models.
By Tasneem Nasser, Susanne Schmid, Roberto Souza, Naser El-Sheimy
arXiv:2603. 18846v3 Announce Type: replace-cross Abstract: Foundation models are used to extract transferable representations from large amounts of unlabeled data, typically via self-supervised learning (SSL).
By Samuel Ofosu Mensah, Camila Roa, Kerol Djoumessi, Philipp Berens
The study proposes a diagnostic-guided approach to choose between stochastic and deterministic longitudinal imaging models based on whether inter-visit changes are driven by disease progression or acquisition variability. Applied to a large, heterogeneous Optos fundus autofluorescence archive, the diagnostic revealed weak time-dependent changes and limited benefit from stochastic models, leading to the development of the deterministic Temporal Retinal U‑Net (TRU). TRU outperformed other classical and deep‑learning comparators on image‑level and eye‑specific progression metrics across held‑out and independent zero‑shot transfer cohorts, though with slightly lower precision in a smaller cross‑vendor cohort.
By Liyin Chen, Souvick Mukherjee, Ines Maria De Carvalho Lains, Nazlee Zebardast, Mengyu Wang, Tobias Elze, Jason I. Comander
arXiv:2606.13315v2 Announce Type: replace
Abstract: MRI self-supervised learning (SSL) has largely emphasized segmentation and dense prediction, while controlled studies of how alternative pretrainin...
By Esra Erg\"un, Hersh Chandarana, Dan Sodickson, Gozde Unal
arXiv:2512.23441v2 Announce Type: replace
Abstract: Temporally aware image representations are crucial for capturing disease progression in 3D volumes of longitudinal medical datasets. However, recen...
By Taha Emre, Arunava Chakravarty, Thomas Pinetz, Dmitrii Lachinov, Martin J. Menten, Hendrik Scholl, Sobha Sivaprasad, Daniel Rueckert, Andrew Lotery, Stefan Sacu, Ursula Schmidt-Erfurth, Hrvoje Bogunovi\'c
arXiv:2605. 23995v4 Announce Type: replace-cross Abstract: Self-supervised learning (SSL) is increasingly used in medical image analysis to reduce dependence on costly expert annotations by learning transferable representations from unlabeled data.
By Chathura Wimalasiri, Kishor Nandakishor, Marimuthu Palaniswami
arXiv:2607. 16681v1 Announce Type: new Abstract: Early sepsis prediction from electronic health records is challenged by irregular sampling, high missingness, and class imbalance.
By Umair bin Mansoor, Munaf Rashid, Roomi Naqvi
arXiv:2609.37642v1 Announce Type: new
Abstract: Self-supervised pretraining reshaped prediction in language and vision, and brain foundation models (BFMs) inherited its promise. Representations learn...
By Giovanni Marraffini (UNITO), Victoria Shevchenko (UNITO), Carlo Alberto Barbano (UNITO), Demian Wassermann (MIND)
The paper explores contrastive self‑supervised learning (SSL) for retinal fundus image classification, comparing SimSiam and SimCLR under limited data and computational resources. It investigates how retinal‑specific augmentation strategies and training parameters affect representation quality, evaluated through linear probing and fine‑tuning on multi‑disease classification and diabetic retinopathy grading tasks. The results demonstrate that tailored augmentations enable lightweight SSL models to learn transferable representations, reducing reliance on large annotated datasets while achieving competitive performance.
arXiv:2607. 20274v1 Announce Type: cross Abstract: Medical image encoders from different groups are increasingly treated as interchangeable, on the assumption that scale and clinical supervision concentrate their representations onto a shared structure.
By Soroosh Tayebi Arasteh, Sebastian Ziegelmayer, Mahshad Lotfinia, Lisa Adams, Sven Nebelung, Jakob Nikolas Kather, Daniel Truhn
The paper introduces SYMBA, a self‑supervised pretraining framework tailored for structural T1‑weighted brain MRI. SYMBA uses anatomically constrained masking, a multi‑scale structural similarity reconstruction loss, and a progressive curriculum to capture distributed morphometric patterns. Evaluated on nine heterogeneous cohorts and two unseen datasets, SYMBA outperforms existing neuroimaging foundation models, achieving high AUROC scores for Alzheimer’s disease classification, mild cognitive impairment conversion, and amyloid status prediction, and shows strong sample efficiency in low‑label settings.
By Nuria Balb\'as-Esteban, Albert Belenguer-Llorens, Elaheh Moradi, Jussi Tohka, Vanessa G\'omez-Verdejo, Carlos Sevilla-Salcedo
The paper explores contrastive self‑supervised learning (SSL) for retinal fundus image classification, comparing SimSiam and SimCLR under limited data and computational resources. It investigates how retinal‑specific augmentation strategies and training parameters affect representation quality, evaluated through linear probing and fine‑tuning on multi‑disease classification and diabetic retinopathy grading tasks. Results indicate that tailored augmentations enable lightweight SSL models to learn transferable representations, reducing reliance on large annotated datasets while achieving competitive performance.
By Bekzat Nurlanbekova, Fung Fung Ting