arXiv Computer Vision

Temporally Consistent Graph Extraction and Matching for Longitudinal Angiographic Images

The paper introduces a method for extracting and matching vessel graphs from longitudinal angiographic images that improves temporal consistency. By performing an early matching step before refining the graphs—removing spurious bulges and merging junctions using joint information—the approach yields a higher matched area and reduces graph fragmentation compared to traditional separate or no refinement strategies. Experiments on complex retinal vessel graphs confirm these benefits.

arXiv AI
6d ago

ReG-SAM: Reference Graph-Driven SAM for 2D Foundational Vessel Segmentation

ReG-SAM is a SAM-based framework designed for 2D vessel segmentation in medical images. It introduces reference graph prompt embeddings (GPEs) and vascular prototype embeddings (VPEs) to capture global spatial and fine-grained modality-specific vessel features, respectively. By building a modality-wise vascular database and learning these embeddings from reference masks, ReG-SAM consistently outperforms existing baselines across 19 datasets, especially on thin vessels.

By Donghang Lyu, Zichen Zhang, Oleh Dzyubachyk, Marius Staring
arXiv Computer Vision
Sep 1

retinalysis-vascx: An explainable software toolbox for the extraction of retinal vascular biomarkers

arXiv:2602.08580v4 Announce Type: replace-cross Abstract: Automatic extraction of retinal vascular biomarkers from color fundus images (CFI) is crucial for large-scale studies of the retinal vasculat...

By Jose D. Vargas Quiros, Michael J. Beyeler, Sofia Ortin Vela, EyeNED Reading Center, Sven Bergmann, Caroline C. W. Klaver, Bart Liefers, VascX Research Consortium
arXiv Computer Vision
Sep 11

SegKAN: High-Resolution Medical Image Segmentation with Long-Distance Dependencies

SegKAN is a new model for high‑resolution medical image segmentation that tackles fragmentation and noise in hepatic vessel CT scans. It replaces the standard embedding module with a novel convolutional network to smooth noise and avoid gradient explosion, and reinterprets spatial relationships between Patch blocks as temporal relationships to better capture positional dependencies. Experiments on a hepatic vessel dataset show a 1.78% improvement in Dice score over the current state‑of‑the‑art model, indicating that the new structure enhances segmentation performance for extended objects.

By Shengbo Tan, Rundong Xue, Shipeng Luo, Zeyu Zhang, Xinran Wang, Lei Zhang, Daji Ergu, Zhang Yi, Yang Zhao, Ying Cai
arXiv Machine Learning
Sep 17

Interpretable Retinal Disease Prediction Using Biology-Informed Heterogeneous Graph Representations

The paper introduces a biology-informed heterogeneous graph representation that models retinal vessel segments, intercapillary areas, and the foveal avascular zone to predict diabetic retinopathy stages from OCTA images. This graph-based approach reframes staging as a graph-level classification task solved with a graph neural network, achieving AUC-ROC values up to 84% and outperforming biomarker-based classifiers, CNNs, and vision transformers. The method also provides detailed, interpretable explanations by precisely localizing abnormal vessels and non-perfusion areas.

By Laurin Lux, Alexander H. Berger, Maria Romeo Tricas, Richard Rosen, Alaa E. Fayed, Sobha Sivaprasada, Linus Kreitner, Jonas Weidner, Martin J. Menten, Daniel Rueckert, Johannes C. Paetzold
Hugging Face Trending Papers
Jul 25

Investigating the Visual Cues of CNNs for Vascular Segmentation: A Case Study in Microscopy and Fundus Imaging

Vascular segmentation is a standard procedure for clinical diagnosis, yet the specific visual features determining model decisions remain poorly understood. This paper investigates the visual cues Convolutional Neural Networks (CNNs) use to segment blood vessels across two distinct imaging domains: fluorescence microscopy and retinal fundus photography.

arXiv Computer Vision
Sep 25

Mind the Gap: Mesh-Guided Repair of Broken Vessels

The paper introduces a mesh-guided post‑processing framework that repairs broken vessel segmentations produced by nnU‑Net. By fitting a deformable template mesh to each predicted binary mask, the method conservatively reconnects disconnected components using thin bridge candidates while respecting foreground‑growth constraints. Evaluation on aorta, Circle of Willis, and pulmonary artery datasets shows that connectivity metrics (ccDice and Betti‑0) improve dramatically with negligible change in overall overlap (Dice).

By Gniewosz Drwiega, Wojciech Szymanski, Marek Wodzinski