arXiv Computer Vision

Dataset-Specific Encoding of Image Content Underlies Cross-Dataset Failure in Brain MRI Foundation Models

Frozen features from brain MRI foundation models lose accuracy on new datasets, a problem often attributed to dataset encoding. The study shows that the failure stems from the content itself being encoded along different directions in each dataset, rather than from dataset encoding or distribution shifts. Only broadly pretrained models like 3DINO and SAM‑Med3D consistently encode the MRI sequence well enough to transfer, while brain‑specific models such as BrainIAC and BrainFM perform no better than an untrained network.

arXiv AI
Jun 12

BrainDINO: A Brain MRI Foundation Model for Generalizable Clinical Representation Learning

arXiv:2604. 27277v3 Announce Type: replace-cross Abstract: Brain MRI underpins a wide range of neuroscientific and clinical applications, yet most learning-based methods remain task-specific and require substantial labeled data.

By Yizhou Wu, Shansong Wang, Yuheng Li, Mojtaba Safari, Mingzhe Hu, Chih-Wei Chang, Harini Veeraraghavan, Xiaofeng Yang
arXiv Machine Learning
Jun 16

Lesion-DDPM: Lesion-Enhanced 3D Diffusion for MS MRI Synthesis

arXiv:2606. 15457v1 Announce Type: cross Abstract: 3D FLAIR MRI is widely recommended as one of the standard MRI sequences for brain imaging in multiple sclerosis (MS), but publicly available MS datasets remain relatively small and vary across scanners, acquisition protocols, and lesion patterns.

By Weidong Zhang, Yongchan Jung, Shafayat Mowla Anik, Furen Xiao, Vasudevan Janarthanan, Enkhzaya Chuluunbaatar, Byeong Kil Lee, Jeeho Ryoo
arXiv Computer Vision
Oct 22

ViBMR: A Large-Scale Multi-Sequence Brain MRI Dataset and Comprehensive Evaluation for Vietnamese Radiology Report Generation

ViBMR is the first large‑scale multi‑sequence brain MRI dataset paired with routine Vietnamese clinical reports, containing 3,649 patients and 11,875 MRI series across T1, T2, FLAIR, and contrast‑enhanced T1 sequences. The authors establish a comprehensive evaluation framework for brain MRI report generation, testing various medical vision‑language models, multi‑sequence inputs, and feature aggregation strategies. Results highlight dataset characteristics, model behavior, and the importance of native low‑resource clinical datasets for reliable Vietnamese‑origin brain MRI report generation.

By Dai Lam Le, Minh Khoi Nguyen, Son Dinh Nguyen, Amir Reza Jafari, Viet Ha, Nguyen Son, Reza Farahbakhsh, Noel Crespi, Phi Le Nguyen