arXiv Computer Vision By Nheng Vanchhay, Ali Hussain, Khan Ziaullah, Moon-Il Joo, Md Ariful Islam Mozumder, Rashedul Islam Sumon, Won-Ae Lee, Min-Sun Cho, Hyeong-Chan Shin, Yujun Park, Baek Hwan Cho, Nam-Hoon Cho, Heejung An, Heung-Kook Choi, Haeyoun Kang, Hyunki Kim, Hee Cheol Kim

With foundation-model features, aggregator complexity does not improve cross-hospital discrimination in gastric whole-slide image classification

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The study evaluated whole‑slide image classifiers for gastric cancer across five Korean hospitals, using foundation‑model features and leave‑one‑hospital‑out validation. A hierarchical patch‑region‑slide graph aggregator (CHIME‑MIL) with site alignment and two‑scale fusion achieved a mean AUC of 0.837, outperforming six conventional attention and transformer aggregators that lacked these steps. However, when matched with the same alignment and fusion, CHIME‑MIL did not surpass simple attention‑based pooling, and global max pooling performed best (AUC 0.855). The alignment step, which subtracts each hospital’s mean feature vector without labels, enabled onboarding of a new hospital from only ten unlabeled slides but yielded only a modest 0.002 AUC improvement, and the model’s accuracy gains were inconsistent. "whyItMatters":"The findings show that adding complex aggregation methods does not necessarily improve cross‑hospital discrimination, highlighting the importance of simpler, label‑free onboarding and calibration checks for deployable pathology systems."

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arXiv Computer Vision
Sep 30

HERO: Histology Encoder for Robust Representation in Oncology

HERO (Histology Encoder for Robust Representation in Oncology) is a ViT‑G/14 pathology foundation model trained with DINO and iBOT objectives and refined using high‑resolution Gram anchoring on a 500‑million‑tile corpus from about 575,000 clinical whole‑slide images. It demonstrates superior robustness to center, scanner, and stain variation compared to other state‑of‑the‑art foundation models, while maintaining competitive performance on tile‑level classification, segmentation, and gene‑expression prediction. Across 39 slide‑level clinical tasks, HERO ranks first on average and achieves the best average rank across six benchmark frameworks under an equal‑weighted analysis.

By Zhi Li (Caris Life Sciences, Irving, TX, United States), Eghbal Amidi (Caris Life Sciences, Irving, TX, United States), Yating Cheng (Caris Life Sciences, Irving, TX, United States), Tyson Dawson (Caris Life Sciences, Irving, TX, United States), Gorkem Can Ates (Caris Life Sciences, Irving, TX, United States), Shuzhen Kuang (Caris Life Sciences, Irving, TX, United States), Norsang Lama (Caris Life Sciences, Irving, TX, United States), Md Ashequr Rahman (Caris Life Sciences, Irving, TX, United States), Zhiying Lu (Caris Life Sciences, Irving, TX, United States), Elisabeth K. Kong (Caris Life Sciences, Irving, TX, United States), Milan Radovich (Caris Life Sciences, Irving, TX, United States), David Spetzler (Caris Life Sciences, Irving, TX, United States), Matthew Oberley (Caris Life Sciences, Irving, TX, United States), George W. Sledge (Caris Life Sciences, Irving, TX, United States), Ming Chen (Caris Life Sciences, Irving, TX, United States)
arXiv Computer Vision
Oct 16

Pathology foundation models for training-free case retrieval in salivary gland tumors

The study investigates whether pathology foundation models can enable training‑free, content‑based retrieval of similar cases from digitized archives of salivary gland tumors. Using a region of interest from a whole slide image, the models retrieve morphologically similar cases and their ICD‑O codes without task‑specific training. Evaluation on 137 cases across 12 morphology categories shows that Atlas2 achieves the highest retrieval accuracy, with macro‑averaged F1 scores ranging from 69.0% to 76.6% across models.

By Maximilian J. Roesel, Niklas Kiermeyer, Philipp Keyl, Frederick Klauschen