Compositional data -- vectors encoding relative proportions -- arise across scientific domains, including ecology, geochemistry, and genomics. The features in these data often come with known hierarchical structure (e.
arXiv:2605. 13894v2 Announce Type: replace-cross Abstract: In this work, we introduce a Tropical Axial Attention neural reasoning architecture that replaces vanilla softmax dot-product attention with max-plus operators, inducing a piecewise-linear structure aligned with dynamic programming formulations.
By Chris Teska, Kurt Pasque, Ruriko Yoshida, Baran Hashemi
arXiv:2310.08774v3 Announce Type: replace-cross
Abstract: Phylogenetics is a branch of computational biology that studies the evolutionary relationships among biological entities. Its long history an...
By Mingyang Zhou, Zichao Yan, Elliot Layne, Esmeralda S. Whitammer, Dinghuai Zhang, Moksh Jain, Mathieu Blanchette, Yoshua Bengio
arXiv:2607. 06224v1 Announce Type: new Abstract: Designing microbial strains that produce high-value chemicals at commercially viable titers remains a central challenge in metabolic engineering.
By Jake Bowden, Laurence Legon, Satnam Surae
arXiv:2609.38506v1 Announce Type: new
Abstract: Tree-like branching structures are common in nature, from botanical trees to neurons, blood vessels and respiratory trees. Their branching shape often...
By Umer Gupta, Saku Peltonen, Martin Ritzert
arXiv:2608. 04460v1 Announce Type: cross Abstract: The quantitative analysis of 3D neuronal morphologies requires capturing both graph topology and spatial geometry.
By Yuyang Zhang, Weihan Xu, Xuehai Zhou, Shucheng Cao, Qihuang Zhang