arXiv:2606. 11646v1 Announce Type: new Abstract: Compositional data -- vectors encoding relative proportions -- arise across scientific domains, including ecology, geochemistry, and genomics.
By Daisuke Yamada, Qijun Zhang, Travis Pence, Barbara B. Bendlin, Federico Rey, Vikas Singh
arXiv:2605. 13894v2 Announce Type: replace-cross Abstract: In this work, we introduce a Tropical Axial Attention neural reasoning architecture that replaces vanilla softmax dot-product attention with max-plus operators, inducing a piecewise-linear structure aligned with dynamic programming formulations.
By Chris Teska, Kurt Pasque, Ruriko Yoshida, Baran Hashemi
arXiv:2607. 06224v1 Announce Type: new Abstract: Designing microbial strains that produce high-value chemicals at commercially viable titers remains a central challenge in metabolic engineering.
By Jake Bowden, Laurence Legon, Satnam Surae
arXiv:2609.38506v1 Announce Type: new
Abstract: Tree-like branching structures are common in nature, from botanical trees to neurons, blood vessels and respiratory trees. Their branching shape often...
By Umer Gupta, Saku Peltonen, Martin Ritzert
arXiv:2603. 19636v2 Announce Type: replace Abstract: Accurate RNA structure modeling remains difficult because RNA backbones are highly flexible, non-canonical interactions are prevalent, and experimentally determined 3D structures are comparatively scarce.
By Zhou Zhang, Hanqun Cao, Cheng Tan, Fang Wu, Pheng Ann Heng, Tianfan Fu
arXiv:2602. 02320v4 Announce Type: replace-cross Abstract: Molecular function is largely determined by structure.
By Feiyang Cai, Guijuan He, Yi Hu, Jingjing Wang, Joshua Luo, Tianyu Zhu, Srikanth Pilla, Gang Li, Ling Liu, Feng Luo