arXiv AI

Extending TotalSegmentator: Predicting Patient and Acquisition Characteristics from CT and MR Images

arXiv AI
Jul 22

Deep Learning Estimation of Sex, Age, Height, and Weight from CT-derived Digitally Reconstructed Radiographs

arXiv:2607. 18638v1 Announce Type: cross Abstract: Purpose: To develop and validate a deep learning ensemble for estimating adult sex, age, height, and weight from coronal digitally reconstructed radiographs (DRRs) generated from diagnostic CT.

By Tomohiro Kikuchi, Kohei Yamamoto, Yukihiro Nomura, Yosuke Yamagishi, Takeharu Yoshikawa, Toshiaki Akashi, Jun Kamohara, Hiroyuki Fujii, Harushi Mori
arXiv Computer Vision
Aug 28

Parameter-Efficient pretrained-CT-to-MRI Transfer for Rectal Cancer Segmentation: Performance-Calibration Trade-offs

The paper introduces SWIFT, a Swin V2‑based model pretrained on 10,444 3D CT volumes and fine‑tuned for rectal cancer segmentation on T2‑weighted MRI. Four configurations—full fine‑tuning (SWIFT), decoder compression (SWIFTe), low‑rank adaptation (SWIFTe‑LoRA), and a LoRA‑decoder ensemble (SWIFTe‑LDE4)—were evaluated on 247 cases, showing that SWIFTe reduces parameters by 70.1% while improving tumor detection and radiomic agreement. The study also demonstrates a trade‑off between detection and boundary agreement, and highlights that SWIFTe‑LDE4 achieves the lowest calibration errors after temperature scaling.

By Aneesh Rangnekar, Jorge Tapias Gomez, Joseph O Deasy, Harini Veeraraghavan
arXiv Machine Learning
Aug 4

MedSAM2-Anatomy: Training-Free Inference-Time Optimization for Musculoskeletal Segmentation

arXiv:2608. 00195v1 Announce Type: cross Abstract: High-resolution 3D segmentation of hip and shoulder anatomy from CT and MRI is essential for surgical planning, yet frozen segmentation models often fail under domain shift.

By John Garcia Henao, Nicholas B\"unger, Benedikt Herzog, Cindy Guerrero Toro, Benjamin Vella, Matthias Biner, Rico Br\"utsch, Carmen Castroviejo Fernandez, Felix \"Ottl, Norman Juchler, Armando Hoch, Bettina Hochreiter, Sven Hirsch, Sebastiano Caprara
arXiv Computer Vision
Aug 26

Model Effect or Label Effect? Refined Annotations and a Human-Referenced Benchmark for Pulmonary Embolism Segmentation

The study investigates how refined annotations versus model training changes affect pulmonary embolism segmentation performance. By re‑annotating 149 CT pulmonary angiography cases and evaluating two pretrained nnU-Net models, the authors find that improving annotation quality increases the Dice similarity coefficient (DSC) by 0.143–0.188, far exceeding the 0.028 DSC change from altering training datasets. A new human‑referenced benchmark model (nnPE) was trained and publicly released, though it performed below all annotators in paired comparisons.

By Qihang Sun, Zhongxiao Liu, Bailiang Jian, Shenman Qiu, Jingyuan Wang, Lei Zhang, Lixiang Xie, Jiazhen Pan, Christian Wachinger
arXiv Machine Learning
Jul 2

Foundation Models vs. Radiomics for Lung Computed Tomography: A Benchmark of Feature Extractors, Classification Heads, and Segmentation Choices

arXiv:2607. 01001v1 Announce Type: cross Abstract: Radiomics is the established approach for CT-based lung cancer phenotyping, yet comparisons with foundation models rarely isolate contributions of feature extractor, classification head, and segmentation choice, or test cross-cohort robustness.

By Nils Neukirch, Martin Maurer, Nils Strodthoff
arXiv AI
Aug 10

Measurements Automatically Extracted from Zero Echo Time MRI Using Deep Learning Image Segmentation and Geometric Modeling Agree with Expert Manual Readings

arXiv:2608. 07368v1 Announce Type: cross Abstract: Computed tomography (CT) remains the reference for 3D osseous morphometry in femoroacetabular impingement (FAI) but requires ionizing radiation and manual measurement.

By Jack Consolini, Eric A. Bogner, Meghan Sahr, Matthew F. Koff, Kevin M. Koch, Hollis G. Potter
arXiv AI
Aug 20

A Few Cases Are All You Need: An Empirical Study of Annotation-Efficient LoRA Fine-Tuning of MedSAM3

The study investigates how few expert-annotated cases are needed to fine‑tune MedSAM3 for abdominal organ segmentation using Low‑Rank Adaptation (LoRA). With only 10 annotated CT or MRI cases, the LoRA‑adapted models achieve performance comparable to specialist systems that require orders of magnitude more data, including reliable gallbladder segmentation and near‑state‑of‑the‑art results for liver, kidneys, and spleen. The approach also generalizes to cardiac segmentation on the Whole Heart dataset, and training takes only 3–5 hours per organ on a single GPU, roughly twice as fast as nnU-Net.

By Sachin Dudda Nagaraju, Bendik Skarre Abrahamsen, Ashkan Moradi, Mattijs Elschot
Hugging Face Trending Papers
Jun 4

MS-DKC: A Dataset Knowledge Card Framework for Designing and Adapting Medical Image Segmentation Models

Medical image segmentation is often framed as a search for stronger architectures, but this can obscure a more fundamental question: what does the dataset require from the model? In medical imaging, this requirement is shaped by foreground occupancy, morphology, boundary ambiguity, topology sensitivity, annotation quality, acquisition variation, and operating point.