arXiv Machine Learning

BrainWideBench: Benchmarking large-scale pretraining and across-animal transfer in multi-region neural recordings

BrainWideBench is a benchmark that evaluates across‑animal transfer on multi‑region neural recordings from 139 mice, covering 276 brain regions. It comprises three task suites—behavior decoding, neural activity prediction, and anatomical organization recovery—to test whether learned representations support diverse downstream objectives. The benchmark shows that while pretraining improves performance over single‑session baselines, current methods vary in transfer ability and none perform uniformly well across all suites, highlighting the challenge of developing general‑purpose neural representations.

arXiv Machine Learning
Aug 4

EEG-FM-Compass: Progress, Benchmarking, and Future Directions for EEG Foundation Models

arXiv:2601. 17883v3 Announce Type: replace Abstract: Electroencephalography (EEG) foundation models (FMs) have recently emerged as a promising paradigm for brain-computer interfaces, aiming to learn transferable neural representations from large-scale heterogeneous recordings.

By Dingkun Liu, Yuheng Chen, Zhu Chen, Zhenyao Cui, Yaozhi Wen, Jiayu An, Jingwei Luo, Dongrui Wu
arXiv Machine Learning
Sep 17

iMINDBench: iEEG Multi-Institution Neural Decoding Benchmark

iMINDBench is a new benchmark for intracranial electroencephalography (iEEG) neural decoding that evaluates models on fifteen tasks across three naturalistic movie‑watching datasets from multiple institutions. It standardizes preprocessing tracks and evaluation splits to enable consistent comparisons. The study shows that pretrained systems outperform baselines within their tracks, but strong spectral baselines remain competitive, and scaling up supervised data yields only modest or task‑dependent gains.

By Geeling Chau, Saba Hashemi, Yonghyeon Gwon, Eshani Patel, Jan DeWitt, Christopher Wang, Andrii Zahorodnii, Sabera J Talukder, Danny Dongyeop Han, Chun Kee Chung, Maryam M Shanechi, Yisong Yue
Hugging Face Trending Papers
Jun 3

Coarse-to-fine Hierarchical Architecture with Sequential Mamba for Brain Reconstruction

Understanding the relationship between deep visual representations and the human visual system is a fundamental challenge in computational neuroscience. While modern vision models achieve strong performance in image recognition, their correspondence with the hierarchical organization of the human visual cortex remains an open question.

arXiv AI
Jul 28

CAPT: A Multi-task Continuous Autoregressive Transformer enabling Cross-dataset and Cross-species Transfer for Calcium Population Dynamics

arXiv:2607. 23258v1 Announce Type: new Abstract: Large-scale calcium imaging has created an opportunity to build foundation-style models for neural population dynamics, but a central question remains unresolved: \textbf{whether a model pretrained on one collection of recordings can generalize to new datasets, experimental paradigms, and even species.

By Xinhong Xu, Yimeng Zhang, Yuanlong Zhang
arXiv AI
Jun 16

OmniMouse: Scaling properties of multi-modal, multi-task Brain Models on 150B Neural Tokens

arXiv:2604. 18827v2 Announce Type: replace-cross Abstract: Scaling data and artificial neural networks has transformed AI, driving breakthroughs in language and vision.

By Konstantin F. Willeke, Polina Turishcheva, Alex Gilbert, Goirik Chakrabarty, Hasan A. Bedel, Paul G. Fahey, Yongrong Qiu, Marissa A. Weis, Michaela Vystr\v{c}ilov\'a, Taliah Muhammad, Lydia Ntanavara, Rachel E. Froebe, Kayla Ponder, Zheng Huan Tan, Emin Orhan, Erick Cobos, Sophia Sanborn, Katrin Franke, Fabian H. Sinz, Alexander S. Ecker, Andreas S. Tolias
arXiv Machine Learning
Sep 7

Brain4FMs: A Benchmark of Foundation Models for Electrical Brain Signal

Brain4FMs is a unified benchmark for evaluating brain foundation models (BFMs) on both scalp EEG and intracranial EEG (iEEG). It incorporates 17 representative models and 21 public datasets spanning clinical diagnosis, sleep staging, communication, and affective computing, and offers dataset-aware preprocessing, cross‑subject evaluation, and standardized downstream workflows. The benchmark highlights that no single BFM consistently outperforms others across all tasks, modalities, and adaptation protocols, prompting further exploratory analyses of model‑specific spatial, spectral, and discrete representations.

By Fanqi Shen, Enhong Yang, Jiahe Li, Junru Hong, Xiaoran Pan, Zhizhang Yuan, Meng Li, Yang Yang