arXiv AI

Multi-Modal Learning meets Genetic Programming: Analyzing Alignment in Latent Space Optimization

arXiv:2604. 08324v3 Announce Type: replace-cross Abstract: Symbolic regression (SR) aims to discover mathematical expressions from data, a task traditionally tackled using Genetic Programming (GP) through combinatorial search over symbolic structures.

arXiv Machine Learning
Aug 27

InsightSR: Refining Symbolic Regression Search Spaces via Parallel Semantic and Structural LLM Guidance

InsightSR is a new framework that integrates Large Language Models (LLMs) with the PySR genetic programming engine to refine symbolic regression search spaces. It employs two LLM-guided pathways: a Semantic Seed Pathway that generates dimensionally consistent functional skeletons, and a Structural Feature Pathway that suggests nonlinear feature transformations. Over successive iterations, these pathways expand the input space and shift the search toward shallow, semantically informed trees, with a feedback loop that evaluates and refines candidate features. The method achieves a 95% exact recovery rate on the Feynman benchmark and 80.18% accuracy on the LLM-SRBench LSR-Transform task, outperforming existing genetic programming and neural-symbolic approaches while preserving strong out-of-distribution generalization.

By Yating Ling, Wenjing Cun, Zhitang Chen
arXiv Machine Learning
Jun 18

Contextualizing Biological Language Models across Modalities via Logit-Space Contrastive Alignment

arXiv:2606. 18703v1 Announce Type: new Abstract: Pretrained biological language models expose per-token probability distributions through masked-token prediction, providing the likelihood interface central to sequence design, variant scoring, and mechanistic interpretation.

By Yanjun Shao, Yundi Chen, Yashvi Patel, Aurelien Pelissier, Mar\'ia Rodr\'iguez Mart\'inez
arXiv Machine Learning
Sep 2

Neural Symbollic Regression Using Deep Learning and Sparse Modelling

Neural Symbolic Regression (NSR) uses neural networks as functional preconditioners to learn smooth, noise‑robust approximations of target functions in an interaction‑aware nonlinear feature space. A subsequent LASSO step extracts sparse, interpretable closed‑form expressions, while distributed hyperparameter optimization with Ray Tune and ASHA scheduling improves predictive accuracy and symbolic fidelity. Experiments on the Nguyen benchmark demonstrate that NSR outperforms SINDy and untuned neural baselines in RMSE, noise robustness, and out‑of‑distribution generalization, with ablation studies highlighting the importance of feature interactions, neural depth, and tuning strategies.

By Ravi Kumar U, Sumitra S
arXiv AI
Aug 12

JEPA-DNA: Grounding Genomic Foundation Models through Joint-Embedding Predictive Architectures

arXiv:2602. 17162v3 Announce Type: replace Abstract: Genomic Foundation Models (GFMs) typically rely on Masked Language Modeling (MLM) or Next-Token Prediction (NTP) to learn the "Laws of Nature".

By Ariel Larey, Elay Dahan, Amit Bleiweiss, Raizy Kellerman, Guy Leib, Omri Nayshool, Dan Ofer, Tal Zinger, Dan Dominissini, Gideon Rechavi, Nicole Bussola, Simon Lee, Shane O'Connell, Dung Hoang, Marissa Wirth, Alexander W. Charney, Nati Daniel, Yoli Shavit
arXiv AI
Jul 14

PivotMerge: Bridging Heterogeneous Multimodal Pre-training via Post-Alignment Model Merging

arXiv:2604. 22823v2 Announce Type: replace-cross Abstract: Multimodal Large Language Models (MLLMs) rely on multimodal pre-training over diverse data sources, where different datasets often induce complementary cross-modal alignment capabilities.

By Zibo Shao, Baochen Xiong, Xiaoshan Yang, Yaguang Song, Qimeng Zhang, Haifeng Chen, Changsheng Xu
arXiv Machine Learning
Sep 21

MOSAIC-SR: Transformer-Guided Symbolic Regression for Scientific Equation Recovery

MOSAIC‑SR is a new symbolic regression method that combines a pretrained Transformer with search‑based refinement. The Transformer generates multiple initial sketches, which seed searches that jointly recover equation structure and constants using scale‑aware optimization and symbolic repair. On the SRSD‑Feynman dataset and six other benchmarks, MOSAIC‑SR achieves the highest symbolic solution rate and ranks among the top two in predictive accuracy, even when irrelevant dummy variables are present.

By Peiyi Zheng, Yanming Kang, Hans De Sterck, Giang Tran