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BS: Take the Hint - Interactive Multitracer PET/CT Lesion Segmentation with a Scribble-Conditioned ResEnc U-Net

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arXiv Computer Vision
Aug 25

Three-Phase Scribble-Adaptive Curriculum Learning for autoPETV Grand Challenge

The paper presents Libo Zhang’s algorithmic solution for the autoPETV Grand Challenge, focusing on interactive lesion segmentation in whole-body PET/CT scans. The method encodes user scribbles as two additional input channels and trains a large residual‑encoder U‑Net (≈140 M parameters) through a three‑phase curriculum over 4000 epochs, progressively moving from fully automatic segmentation to handling user‑provided scribbles and finally correcting its own mistakes via simulated error‑driven steps. Using 1811 studies for training and an ensemble of five‑fold checkpoints, the approach achieves a mean AUC‑Dice of 3.836 and a mean AUC‑DMM of 3.869 in interactive five‑fold cross‑validation, with significant gains from the first corrective scribble.

By Libo Zhang
computer-vision
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arXiv Computer Vision
4d ago

Anatomy-Aware Promptable Segmentation with Online Interactive Training for AUTOPET V

The paper introduces an anatomy-aware, promptable segmentation model for whole-body lesion detection in FDG and PSMA PET/CT scans, tailored for the AUTOPET V challenge. The approach builds on nnU-Net, employing a two-stage training process: an initial pre-training phase for strong baseline segmentation and an online interactive phase that refines predictions using scribble prompts. Anatomical context is integrated via organ supervision with a shared head predicting both lesions and organs, reducing false positives, while a tracer classifier directs studies to either a combined FDG+PSMA model or a PSMA-specific model. Cross-validation results show that organ-supervised training yields the most stable performance, the interactive stage consistently improves Dice scores, and PSMA-specific training delivers the best tracer-wise results.

By Pablo Lozano-Jimenez, Sergio Romero-Tapiador, Ruben Tolosana
computer-vision
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arXiv Computer Vision
4d ago

Prompt-Guided Interactive Segmentation of Interstitial Lung Disease in Thoracic CT

The paper introduces the first adaptation of the MedSAM2 foundation model for interactive 3D segmentation of interstitial lung disease (ILD) on thoracic CT scans. It evaluates three fine‑tuning strategies and four prompt types—bounding‑boxes, points, lassos, and scribbles—finding that full model fine‑tuning yields the best performance, improving Dice scores by 4.7 percentage points over the baseline. A proof‑of‑concept workflow is presented where MedSAM2 is first initialized with an automatic prior and then refined by radiologist prompts, with all resources released on GitHub.

By Vasilis Dedousis, Lubnaa Abdur Rahman, Lorenzo Brigat{\omicron}, Ethan Dack, Andreas Christe, Christoph Frank, Manuela Funke-Chambour, Justus Roos, Adrian Huber, Lukas Ebner, Stavroula Mougiakakou
computer-visionfine-tuning
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arXiv Computer Vision
Aug 28

DALE-CT: Depth-Aware 2D Slice Encoders Learn an Anatomical World Model of Chest CT

DALE-CT introduces depth‑aware 2D slice encoders that learn an anatomical world model of chest CT scans without 3D or positional supervision. By sampling self‑supervised views across a physical $z$‑axis slab, the encoder captures how anatomy changes between neighboring slices, enabling it to recover slice ordering and distinguish slices by anatomy alone. The model, trained on a large 287k‑scan corpus, achieves state‑of‑the‑art performance on CT‑RATE and is released with full code and evaluation tools.

By Evan W. Damron, Mahmut S. Gokmen, Mitchell A. Klusty, Caroline N. Leach, Emily B. Collier, V. K. Cody Bumgardner
llms
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