Hugging Face Trending Papers

Comparison of techniques for fine-tuning open-weight models for entity extraction from radiology reports

arXiv Computation and Language
1d ago

Comparison of techniques for fine-tuning open-weight models for entity extraction from radiology reports

The study evaluates whether a fine‑tuned open‑weight model (Gemma‑3‑12B) can match the performance of GPT‑4o in extracting multi‑label intracranial hemorrhage acuity from non‑contrast head‑CT reports. Using a 2×2 design that varied adaptation strategy (classification head vs. instruction fine‑tuning) and training‑data source (distilled real GPT‑4o labels vs. synthetic GPT‑4o‑generated reports), the distilled instruction‑tuned model achieved macro‑F1 scores comparable to GPT‑4o and surpassed the untuned base model. The key finding is that the source of training data—distilled real reports—was more important than the fine‑tuning method, and that the entire fine‑tuning and inference process fits on a single 24 GB consumer GPU.

By Aawez Mansuri, Kush Mehta, Mohammadreza Chavoshi, Jahanzaib Malik, Theodorus Dapamede, Frank Li, Rohan Isaac, Beatrice Brown-Mulry, Chiratidzo Rudado Sanyika, YoungSeok Jeon, Judy W. Gichoya, Ali Emami, Hari Trivedi
arXiv Machine Learning
Jul 17

Privacy Leakage in Federated Learning in Radiology Reports: A Comparative Evaluation of Tokenizer-Driven Privacy Risks

arXiv:2607. 14205v1 Announce Type: new Abstract: Federated learning (FL) enables multi-institutional training on clinical text without sharing raw data, but gradient inversion can reconstruct sensitive information from shared model updates.

By Santhosh Parampottupadam, Andres Martinez, Dimitrios Bounias, Sinem Sav, Klaus Maier-Hein, Ralf Floca
arXiv AI
Jul 8

Harrison.Rad 1.5 Technical Report: A radiology foundation model that can draft reports from images, priors and clinical context

arXiv:2607. 05880v1 Announce Type: cross Abstract: Imaging demand is growing faster than the radiology workforce can expand, and reporting backlogs cannot be resolved through training and recruitment alone.

By Suneeta Mall, Vladimir Nekrasov, Ashnil Kumar, Sajith Karunasena, Aiden Nibali, Alix Bird, Mateo Diaz Shine, Jarrel Seah
arXiv Machine Learning
Aug 4

RadPRISM: Schema-stratified radiology-report supervision for concept-disentangled image representations and visual grounding

arXiv:2608. 00147v1 Announce Type: cross Abstract: Vision-language pretraining learns rich medical image representations from radiology reports, but previous model variants commonly operate within a single shared embedding space, so concept-level structure and interpretability must be recovered post hoc, limiting model transparency and, hence, clinical utility.

By Fabian Drexel, Marlene Fritzsche, Era Stambollxhiu, Miriam Kumpf, Lena Schmitzer, Lea Schumann, Jannik Kahmann, Friedrich Puttkammer, Johannes Moll, Jannik L\"ubberstedt, Zeineb Ben Chaaben, Anirudh Narayanan, Cosmin I. Bercea, Sebastian Ziegelmayer, Marcus R. Makowski, Daniel Rueckert, Lisa C. Adams, Keno K. Bressem
arXiv AI
Jul 7

CaresAI at SMM4H-HeaRD 2026: Predicting TNM Staging

arXiv:2607. 03466v1 Announce Type: cross Abstract: This study aims to predict Tumor, Node, and Metastasis (TNM) stage labels independently, with the Cancer Genome Atlas (TCGA) pathology report as the sixth shared task of SMM4H-HeaRD 2026.

By Joseph Itopa Abubakar, Jorge Jarme, Favour Igwezeke, Mary Adewunmi
arXiv Computer Vision
Aug 27

Can You Trust Frozen Hematology Foundation Models under Acquisition Shift?

The study evaluates 15 frozen hematology foundation-model embeddings across four single‑cell acquisition domains, finding that while in‑domain accuracy is near‑saturated (macro‑F1 0.98–0.997), cross‑dataset performance drops dramatically (34–72%) and model rankings shift. Probe‑dependent rank transfer is observed, with 1‑NN retrieval more stable than linear heads, yet neither reliably predicts target robustness. Calibration deteriorates off‑domain (ECE rises from 0.004 to 0.35), and exposure to internal cohorts confounds shift analysis; a training‑free pseudo‑label‑balanced feature normalization (CBR) modestly improves target‑prior robustness and calibration. whyItMatters":"The findings highlight that frozen hematology foundation models, though accurate in‑domain, may fail under realistic scanner, site, and class‑prior shifts, underscoring the need for comprehensive audits of accuracy, calibration, exposure, and robustness before clinical deployment."

By Jai Kumar Sharma, Peeyush Tapadiya
arXiv AI
Sep 25

Med-AR: Autoregressive Vision-Language Pretraining for Long-Tailed Chest X-Ray Classification and Uncertainty-Aware Evaluation

Med-AR introduces two autoregressive vision‑language models, Med‑AR‑8B and Med‑AR‑2B, pretrained on structured radiology reports, abnormality‑focused text, and region annotations to address long‑tailed chest X‑ray classification. The models outperform existing contrastive, self‑supervised, and supervised encoders—including Med‑CLIP, CheXFound, EVA‑Base, ARK, and BioViL‑T—across PadChest, MIMIC‑CXR, and CheXpert, achieving higher mean AUROC and AUPRC for head, medium, and tail findings and lower excess area under the risk‑coverage curve. Med‑AR also demonstrates improved selective‑prediction performance, with Med‑AR‑8B raising tail‑label mean AUPRC on MIMIC‑CXR from 0.1033 to 0.1441 and Med‑AR‑2B delivering the strongest discrimination on PadChest.

By Janhavi Prabhu, Sahil, Akshay V, Shivam Shukla, Manoj Tadepalli, Preetham Putha
Hugging Face Trending Papers
Jul 30

DS@GT ARC at ImageCLEFmedical 2026: Architectural Diversity for Concept Detection and Foundation-Model Scaling for Caption Prediction in Medical Image Analysis

We describe the DS@GT submissions to the ImageCLEFmedical Caption 2026 challenge, which continues a long-running benchmark on the ROCOv2 dataset with two tracks: Concept Detection (Task 1), assigning UMLS Concept Unique Identifiers (CUIs) to radiology images, and Caption Prediction (Task 2), generating natural-language captions. For Task 1, our primary submission was a three-way late-fusion ensemble of ConvNeXt-V2, BiomedCLIP ViT-B/16, and DenseNet-169 with a regularized ''Honest Threshold Tuning'' procedure designed to avoid validation overfitting on rare concepts; this submission ranked first on the official submission with a primary $F_1$ of $0.

arXiv AI
Aug 5

CARE-X: Towards Clinically Useful Radiology VLMs with Auxiliary Supervision, Reward-Aligned Learning, and Tool-Augmented Measurement

arXiv:2608. 03890v1 Announce Type: cross Abstract: A clinically useful chest X-ray system must go beyond fluent report generation: it should classify findings with tunable decision thresholds, localize them spatially, and derive the anatomical measurements upon which many diagnoses depend.

By Mercy Prasanna Ranjit, Anirban Porya, Sathvik Joel, Niharika Vadlamudi, Nikhilesh Chowdary Eathamukkala, Prasanth V V, Abhyuday Kumara Swamy, Pranay Narhari Umredkar, Pradeep Narayan, Vivek Rajagopal, Tanuja Ganu
arXiv AI
Jun 9

RadOT-Eval: Auditable Structured-Evidence Transport for Radiology Report Evaluation

arXiv:2606. 08769v1 Announce Type: cross Abstract: Automatic evaluation is critical for high-stakes text generation, where errors often involve omitted findings, hallucinated content, polarity reversals, location changes, uncertainty mismatches, and temporal-comparison errors rather than low surface similarity alone.

By Weixin Liu, Juming Xiong, Yang Li, Qingyuan Song, Susannah Rose, Murat Kantarcioglu, Bradley Malin, Zhijun Yin