arXiv Computation and Language

From Bench-to-Bedside: A Review of Clinical Trials in Drug Discovery and Development

arXiv AI
Sep 2

Towards AI-Assisted Clinical Trial Matching: Practical Considerations, Multicenter Evaluation, and Real-World Deployment

arXiv:2609.01202v1 Announce Type: cross Abstract: Clinical trials are essential for advancing cancer care and drug development, but many fail because of insufficient patient enrollment. While there i...

By Yin Fang, Qiao Jin, Shubo Tian, Lauren He, Maya Geer, Noor Naffakh, Ryan Huu-Tuan Nguyen, Zifeng Wang, Jimeng Sun, Charalampos S. Floudas, James L. Gulley, Kamilia Moalem, Catarina Martins Maia, Amanda Nottke, Juan W. Valle, Melinda Bachini, Lourdes Rocha-Nussbaum, Kari Ramage, Nikita Curry, Megan Barnes, Mandy Mansaray, Darlene Gabeau, Craig E. Grossman, Heath Skinner, Michael Burczynski, NIH-TrialBench Consortium, Zhiyong Lu
arXiv AI
Jun 30

Accelerating scientific discovery with Co-Scientist

arXiv:2502. 18864v2 Announce Type: replace Abstract: Scientific discovery is driven by scientists generating novel hypotheses for complex problems that undergo rigorous experimental validation.

By Juraj Gottweis, Wei-Hung Weng, Alexander Daryin, Tao Tu, Petar Sirkovic, Artiom Myaskovsky, Grzegorz Glowaty, Felix Weissenberger, Alessio Orlandi, Dan Popovici, Anil Palepu, Keran Rong, Ryutaro Tanno, Khaled Saab, Fan Zhang, Jacob Blum, Andrew Carroll, Kavita Kulkarni, Nenad Tomasev, Dina Zverinski, Ivor Rendulic, Elahe Vedadi, Florian Hasler, Luka Rimanic, Marina Boia, Ivan Budiselic, Ben Feinstein, Mathias Bellaiche, Tom Sheffer, Jan Freyberg, Jeremy Ratcliff, Ottavia Bertolli, Katherine Chou, Avinatan Hassidim, Burak Gokturk, Amin Vahdat, Yuan Guan, Vikram Dhillon, Eeshit Dhaval Vaishnav, Byron Lee, Tiago R D Costa, Jos\'e R Penad\'es, Gary Peltz, Yossi Matias, James Manyika, Demis Hassabis, Yunhan Xu, Pushmeet Kohli, Annalisa Pawlosky, Alan Karthikesalingam, Vivek Natarajan
arXiv AI
1d ago

Defining and Categorising Human-AI Interactions in Clinical Trials: A Multidimensional Human-AI Classification Approach

The paper introduces a multidimensional framework for classifying human‑AI interactions (HAIIs) in clinical trials, categorising interactions by AI tasks, human‑AI relationships, interaction configurations, and interacting human groups. It evaluates the framework by applying it to 15 trials, with categorisation performed by both human reviewers and large language model classifiers. The study demonstrates that LLMs can assist in categorisation while highlighting the continued need for human judgment when trial records are incomplete or ambiguous.

By Sandra Woolley, Tim Collins, Khalid Khattak, Illia Chernomorets, Ariane Arevalo, Chris Richardson
arXiv AI
Aug 14

MatchMiner-AI: Open-source, Privacy-preserving Cancer Clinical Trial Matching using Artificial Intelligence

arXiv:2412. 17228v4 Announce Type: replace Abstract: Background: Clinical trials are essential to advancing cancer treatments, but fewer than 10% of adults with cancer enroll in therapeutic trials.

By Jennifer Altreuter, Pavel Trukhanov, Morgan A. Paul, Michael J. Hassett, Irbaz B. Riaz, Muhammad Umar Afzal, Arshad A. Mohammed, Ayub Umair, Huan He, Chueh Husan Hsu, Sarah Sammons, James Lindsay, Emily Mallaber, Harry R. Klein, Gufran Gungor, Matthew Galvin, Michael Deletto, Sabrina Y. Camp, Stephen C. Van Nostrand, James Provencher, Joyce Yu, Naeem Tahir, Jonathan Wischhusen, Olga Kozyreva, Taylor Ortiz, Hande Tuncer, Jad El Masri, Alys Malcolm, Tali Mazor, Ethan Cerami, Kenneth L. Kehl
arXiv AI
Sep 1

Responsible Integration of AI in Cancer Genomics: Barriers, Risks, and Pathways to Trustworthy Clinical Translation

arXiv:2608.30912v1 Announce Type: new Abstract: Artificial intelligence (AI) and natural language processing (NLP) are increasingly used to extract, integrate, and interpret biomedical knowledge rele...

By Bahar \.Ilgen, Yiannos Tolias, Denise K\"uhnert, Paraskevi Papadopoulou, Magnus Westerlund, Dominik Heider, Katharina Ladewig, Georges Hattab
arXiv AI
Sep 7

A Semantic Model of Genetic Evidence: A Step Toward Bridging the Basic-Science-Clinic Gap

The article presents a new semantic model for representing scientific evidence, specifically tailored to genetics, that extends existing standards by adding fine‑grained, domain‑specific structure. It aligns with FHIR Evidence and SEPIO, incorporates a compact vocabulary validated by SHACL, and was tested in a human‑AI annotation pilot on six genetics papers, producing 28 evidence items and 95 source‑anchored assertions. The authors argue that this model advances trustworthy, AI‑ready infrastructure for variant interpretation by providing a reference data model and validation schema for genetic evidence.

By Michael Bouzinier, Dmitry Etin