arXiv Computer Vision

SADL: A Size-Adaptive Decision Layer for Chronic Stroke Lesion Segmentation in ISLES 2026

SADL is a size‑adaptive decision layer that improves chronic stroke lesion segmentation on T1‑weighted MRI by combining an eleven‑member nnU‑Net ensemble with adaptive thresholding and pruning. The ensemble incorporates dice + top‑K loss, heavy augmentation, per‑lesion volume re‑weighting, stochastic weight averaging, and a cohort‑balanced sampling block with a residual‑encoder backbone. On a 91‑case holdout, SADL achieves Dice 0.7322, lesion‑F1 0.7461, and PR‑AUC 0.8430, with a statistically significant gain in lesion‑F1 (p=0.024) especially for small lesions.

arXiv AI
Sep 25

CATCH: Counterfactual Anatomical Tissue Inpainting with Conditional Haar Diffusion

CATCH is a conditional 3D diffusion model operating in an invertible Haar-wavelet domain designed to inpaint masked regions in T1‑weighted brain MRI with plausible, tumor‑free tissue while preserving observed anatomy. The model’s denoiser uses noisy target coefficients, voided‑image coefficients, and a signed mask, guided by tumor‑excluded wavelet reconstruction and a hole‑focused loss, and hard compositing ensures observed voxels remain unchanged. Experiments on BraTS data show that a weighted mixture of tumor‑derived, irregular‑blob, and ellipsoidal masks yields the best performance, achieving higher SSIM, PSNR, and lower MSE compared to fixed or random augmentation baselines.

By Simon Winther Albertsen, Hjalte Bjoernstrup, Said Djafar Said, Mostafa Mehdipour Ghazi
arXiv Computer Vision
Sep 11

Pre- and Post-Treatment Brain Metastases Segmentation Using nnU-Net with Post-Processing for BraTS 2026

The paper presents a segmentation pipeline for brain metastases in both pre‑ and post‑treatment cases using a 5‑fold nnU‑Net ResEnc‑L ensemble trained on 1,296 four‑modality cases. A rule‑based post‑processing cascade improves the lesion‑wise Dice similarity coefficient (LW‑DSC) for enhancing tumour, tumour core, whole tumour, and resection cavity sub‑regions, achieving LW‑DSC scores of 0.733, 0.751, 0.713, and 0.549 respectively on the official validation leaderboard. The authors conduct a five‑fold out‑of‑fold analysis to validate the robustness of each post‑processing stage, provide a mechanistic explanation of LW‑DSC behaviour, and report thirteen negative results that challenge common intuitions, with all code released under Apache‑2.0.

By Haobin Liu, Xin Wang
arXiv Machine Learning
Sep 4

Sharpening the Ensemble: An SSIM-Aligned Residual Refiner for Brain-MRI Inpainting Post-Processing

The paper proposes a lightweight residual refiner that post‑processes the outputs of a two‑model ensemble for brain‑MRI inpainting. By training the refiner with an λ‑weighted combination of α loss and SSIM, the authors achieve a modest but statistically significant SSIM improvement (from 0.8767 to 0.8780 on a held‑out set) without altering MSE. Ablations show that adding a third model or using classical unsharp masking does not yield similar gains, indicating the improvement comes from learned sharpening rather than generic post‑processing.

By Kubilay Ka\u{g}an K\"om\"urc\"u, \.Ilkay \"Oks\"uz
arXiv AI
Oct 9

Bi-temporal Image-driven Acute Stroke Evolution Analysis

The paper introduces a bi‑temporal framework that links admission computed tomography perfusion (CTP) data with follow‑up diffusion‑weighted MRI (DWI) outcomes in acute ischemic stroke. By extracting statistical, radiomic, and deep‑learning features from CTP and classifying tissue into six outcome‑aware regions, the authors demonstrate that CTP signatures can distinguish salvaged versus infarcted penumbra and identify non‑hypoperfused tissue that later infarcts. Cross‑dataset validation on the ISLES'24 dataset confirms consistent feature‑space separations, suggesting that admission CTP contains richer outcome information than traditional core‑penumbra delineation.

By Md Sazidur Rahman, Kjersti Engan, Kathinka D{\ae}hli Kurz, Mahdieh Khanmohammadi
Hugging Face Trending Papers
Sep 10

Pre- and Post-Treatment Brain Metastases Segmentation Using nnU-Net with Post-Processing for BraTS 2026

The paper presents a pragmatic segmentation pipeline for brain metastases in the BraTS 2026 Task 1, using a 5‑fold nnU-Net ResEnc‑L ensemble trained for 1,000 epochs on 1,296 four‑modality cases. A rule‑based post‑processing cascade tuned for the lesion‑wise Dice similarity coefficient (LW‑DSC) improves performance, achieving LW‑DSC scores of 0.733, 0.751, 0.713, and 0.549 on enhancing tumour, tumour core, whole tumour, and resection cavity, respectively. The authors audit each post‑processing stage with a five‑fold out‑of‑fold analysis, confirm two stages as robust, and provide a mechanistic analysis of LW‑DSC, along with thirteen negative results that challenge common intuitions.

arXiv Computer Vision
Sep 18

Ischemic Stroke Segmentation and Net Water Uptake Quantification on Multicenter Non-Contrast CT Using Supervised Target-Domain Adaptation

This study presents a domain-aware deep learning framework based on nnU-Net for segmenting ischemic stroke lesions on non‑contrast CT scans and quantifying net water uptake (NWU). Trained on data from Hamburg and the Acute Ischemic Stroke Dataset, the model was fine‑tuned on small target‑domain subsets from Boston and ISLES, achieving median Dice scores of 0.68 and 0.56 for lesions ≥30 mL, and an NWU mean absolute error of 1.37 percentage points on the Boston cohort. The results demonstrate that target‑domain adaptation can enable accurate NCCT‑only infarct segmentation and low‑error NWU estimation across heterogeneous multicenter datasets.

By Linus Britt, Maximilian Nielsen, Susan Klapproth, Andre Kemmling, Michael H. Lev, Gabriel Broocks, Rene Werner, Thilo Sentker
arXiv Computer Vision
Oct 2

Image-Domain Poisson-Perturbation Robustness of NCCT Slice Classification

The study investigates how image‑domain Poisson perturbations affect the classification of ischemic core/penumbra in non‑contrast CT slices. Using a CPAISD cohort, the authors compared direct ResNet‑18 classification with a denoising‑then‑classifying pipeline and found that denoising generally reduced performance. A prospective experiment with joint denoising‑classification models showed no statistically significant advantage over direct noisy classification, indicating limited robustness to Poisson noise.

By Rhea Ghosal, Ronok Ghosal, Eileen Lou