Benchmarks and evaluation

Leaderboards, eval harnesses and ablations — the contested business of deciding which model is actually better.

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arXiv Machine Learning
Jun 25

OmegAMP: Targeted AMP Discovery via Biologically Informed Generation

arXiv:2504. 17247v3 Announce Type: replace Abstract: Deep learning-based antimicrobial peptide (AMP) discovery faces critical challenges such as limited controllability, lack of representations that efficiently model antimicrobial properties, and low experimental hit rates.

By Diogo Soares, Leon Hetzel, Paulina Szymczak, Marcelo Der Torossian Torres, Johanna Sommer, Cesar de la Fuente-Nunez, Fabian Theis, Stephan G\"unnemann, Ewa Szczurek
arXiv Machine Learning
Jun 25

Quantization Inflates Reasoning: Token Inflation as a Hidden Cost of Low-Bit Reasoning Models

arXiv:2606. 25519v1 Announce Type: cross Abstract: Quantization is widely used to reduce the inference cost of large language models, but its effect on reasoning models is not fully captured by final-answer accuracy or per-token latency.

By Xinyu Lian, Walid Krichene, Beichen Huang, Masahiro Tanaka, Olatunji Ruwase, Li Zhang, Minjia Zhang
arXiv Machine Learning
Jun 25

Frequency Domain Reservoir Computing

arXiv:2606. 24969v1 Announce Type: new Abstract: While the quadratic sequence-length bottleneck of transformers has fueled a resurgence in recurrent models, effectively capturing complex dynamics requires architectures that balance efficient training with highly expressive latent states.

By Klaus Schertler, Xiomara Runge, Andrea Ceni, David Kappel, Claudio Gallicchio
arXiv Machine Learning
Jun 25

Same Evidence, Different Answer: Auditing Order Sensitivity in Multimodal Large Language Models

arXiv:2606. 26079v1 Announce Type: cross Abstract: Standard benchmarks for multimodal large language models (MLLMs) score each item on one canonical ordering and miss whether order-irrelevant shuffling changes the answer, a baseline reliability property called for by emerging AI evaluation guidelines.

By Akshay Paruchuri, Sanmi Koyejo, Ehsan Adeli
arXiv Machine Learning
Jun 25

Project Auto-World: Towards Automated Benchmarking of Neural Relational Reasoners

arXiv:2606. 24965v1 Announce Type: cross Abstract: Reasoning about relational structures remains a significant challenge for neural models, particularly when they must systematically apply learned knowledge to problem instances that are harder than those seen in training.

By Anirban Das, Joanne Boisson, Irtaza Khalid, Sumita Garai, Steven Schockaert
arXiv Machine Learning
Jun 25

Neglected Free Lunch from Post-training: Progress Advantage for LLM Agents

arXiv:2606. 26080v1 Announce Type: new Abstract: Process reward models enable fine-grained, step-level evaluation of LLMs, yet building them for agentic settings remains prohibitively difficult: long-horizon interactions, irreversible actions, and stochastic environment feedback make both human annotation and Monte Carlo estimation infeasible at scale.

By Changdae Oh, Wendi Li, Seongheon Park, Samuel Yeh, Tanwi Mallick, Sharon Li
arXiv Machine Learning
Jun 25

Agentic evolution of physically constrained foundation models

arXiv:2606. 25532v1 Announce Type: cross Abstract: Artificial intelligence increasingly drives automated scientific discovery, yet contemporary generalist agents lack physical grounding, frequently hallucinating hardware-incompatible designs.

By Jiangwei Zhang, Wen Sun, Chong Wang, Shiyao Li, Cheng Che, Chunjing Han, Dan Meng, Jian Yang, Yu Wang, Rui Hou
arXiv Machine Learning
Jun 25

TopoCast: A Topological Fidelity Framework for Evaluating Transformer-Based Time Series Forecasting

arXiv:2606. 25439v1 Announce Type: new Abstract: Deep learning-based models have achieved state-of-the-art performance in Time Series Forecasting (TSF), yet their evaluation remains dominated by pointwise error metrics such as Mean Squared Error (MSE), which quantify numerical accuracy but overlook structural properties of the forecast signal, including recurrent dynamics, oscillatory behavior, and phase alignment.

By Sandeepa Weerasekara, Sandareka Wickramanayake