arXiv:2607. 04987v1 Announce Type: new Abstract: Cell-type deconvolution, the task of estimating the proportions of constituent cell types in a heterogeneous biological sample, is a core problem in computational biology.
By Dmytro Rizdvanetskyi, Nathan Ross, Pavlo Lutsik
arXiv:2609.25088v1 Announce Type: cross
Abstract: Survival prediction for glioblastoma multiforme (GBM) demands models that are both accurate and interpretable, yet existing approaches treat these ob...
By Mushahid Intesum
arXiv:2607. 10196v1 Announce Type: new Abstract: Access to sufficiently large biomedical datasets remains a major obstacle for machine learning in Raman spectroscopy-based diagnostics.
By Andrei Iu\c{s}an, Iulian Vasile, Daria Voiculescu, Ion Petre, Andrei P\u{a}un, Bogdan Oancea, Mihaela P\u{a}un
arXiv:2408.07988v3 Announce Type: replace
Abstract: Despite significant research efforts and advancements, cancer remains a leading cause of mortality. Early cancer prediction has become a crucial fo...
By Samta Rani, Tanvir Ahmad, Sarfaraz Masood, Chandni Saxena
The study evaluates the use of default decision thresholds (t=0.50) in multi‑label enzyme commission (EC) number prediction across 14,096 compounds and six EC classes. It finds a high mean accuracy of 77.16% but low macro F1 (0.3976) and macro recall (0.3872), indicating severe class‑imbalance issues: majority classes are over‑predicted while minority classes, especially EC6, have zero recall despite reasonable ROC‑AUC. The authors recommend target‑specific threshold tuning and conformal calibration as post‑processing safeguards to expose and correct these hidden errors.
By Bilal Ahmad, Rajed Mehmood
arXiv:2606. 20174v1 Announce Type: new Abstract: Cell-free DNA (cfDNA) is a promising avenue for non-invasive multicancer early detection (MCED), in that, it can enable multiple cancer detection simultaneously from a single blood draw, with particular sensitivity to cancers that currently lack established screening programs.
By Nicko Starkey, Marcin W. Wojewodzic, Krzysztof Rzecki
arXiv:2607. 20641v1 Announce Type: new Abstract: Federated learning (FL) enables multiple clinical institutions to collaboratively train a shared disease classifier without centralizing patient data.
By Afsaneh Mahanipour, Hana Khamfroush
arXiv:2512. 22240v5 Announce Type: replace-cross Abstract: Machine learning models are primarily judged by predictive performance, especially in applied genomics, where explanations are read as biological findings.
By Chama Bensmail
arXiv:2608.29944v1 Announce Type: new
Abstract: Brain tumor segmentation in magnetic resonance imaging (MRI) is a critical task for diagnosis and treatment planning. Despite the success of deep learn...
By Henrique Zan Grande, Jo\~ao G. Pitol, Lucas B. Schuck, Rafael V. Serenato, Rayson Laroca, Andre Gustavo Hochuli
arXiv:2606. 09898v2 Announce Type: replace Abstract: Cancer treatment involves decisions across multiple clinical outcomes, yet pathway-informed deep learning models are typically evaluated in isolation, making their relative benefits unclear.
By Sujoy Banik, Sayantan Chakraborty, Boishakhi Das Toma, Zainab Ghafoor, Ushashi Bhattacharjee, Koushik Howlader, Tirtho Roy
Deep learning-based computer-aided diagnosis (CAD) systems have shown strong performance in breast cancer diagnosis, particularly for classification tasks in mammography. However, domain shifts across multi-site datasets remain a challenge, especially when models are applied to unseen domains.
arXiv:2609.38181v1 Announce Type: new
Abstract: Survival analysis estimates time-to-event outcomes from patient covariates and is widely used for medical risk assessment. Patients seeking prognostic...
By Juan M Zambrano Chaves, Peniel Argaw, Risa Ueno, Carlo Bifulco, Kristina Young, Rom Leidner, Tristan Naumann, Hoifung Poon