arXiv Machine Learning

Represent, Then Generate: Multimodal-Conditioned Time-Series Generation under Irregular Missingness

arXiv:2608. 12592v1 Announce Type: new Abstract: Continuous physiological time series underpin modern clinical monitoring, yet many of the most informative signals are invasive, expensive, or simply unavailable for a given patient.

arXiv Machine Learning
Jul 27

Autoregressive EHR Foundation Models with Multimodal Inputs

arXiv:2607. 22264v1 Announce Type: new Abstract: Autoregressive foundation models trained on tokenized electronic health records (EHRs) can support zero-shot clinical prediction, yet most operate on structured event codes alone, and do not incorporate multiple modalities in a principled way.

By Yuxuan Liu, Joshua Placidi, Jinpei Han, Alfred John Balston, Marek Rei, A. Aldo Faisal
arXiv AI
Aug 24

Curriculum-Aware Interpolate-then-Refine: Learned Physiological Time-Series Imputation under Realistic Missingness

The paper introduces Curriculum‑Aware Interpolate‑then‑Refine (CAIR), a two‑stage framework for imputing physiological time‑series data. CAIR first learns a coarse base curve with a bidirectional‑GRU interpolator and then refines it through three Transformer passes, trained under a random‑gap curriculum that mimics realistic missingness. Evaluations on continuous glucose monitoring and arterial pressure datasets show CAIR outperforms all baselines across MCAR, MAR, and NMAR mechanisms, especially for long gaps and value‑dependent dropout, while also preserving clinically relevant burden metrics.

By Yu-Chao Huang, Haochen Zhang, Nicholas Konz, Tianlong Chen
arXiv Machine Learning
Jul 2

Timesynth: A Temporal Fidelity Framework for Health Signal Digital Twins

arXiv:2607. 00431v1 Announce Type: new Abstract: Forecasting models for health-signal digital twins must preserve the oscillatory, frequency, phase, and state-transition dynamics of physiological signals, yet the pointwise metrics used to benchmark them cannot detect when these fundamental properties are lost.

By Md Rakibul Haque, Shireen Elhabian, Warren Woodrich Pettine
arXiv Machine Learning
Aug 14

CardioState-JEPA: Delay-Aware Cross-Modal Learning of a Shared Cardiac Representation

arXiv:2608. 12944v1 Announce Type: new Abstract: Electrocardiography (ECG), photoplethysmography (PPG), and phonocardiography (PCG) provide complementary views of the same cardiac cycle, yet existing cardiac foundation models are trained for a single sensing modality, leaving the shared physiology across sensors unexploited.

By Hamza Shafiq, Hung Manh Pham, Bin Zhu, Pan Zhou, Jun Hu, Aaqib Saeed
arXiv AI
Sep 7

MedFlow: Class-Aware Multi-Scale Generation for Medical Time-Series Synthesis

MedFlow is a class‑aware multi‑scale flow matching framework designed to synthesize medical time‑series data. It uses a vector‑quantized multi‑scale tokenizer to capture both coarse and fine temporal patterns, and introduces Token Marginal Guidance to steer generation toward minority‑class characteristics. Experiments on four public datasets show MedFlow outperforms diffusion baselines, improving AUPRC by 5.8%, reducing Context‑FID by 88.6%, and achieving 3.8× higher sampling throughput.

By Yanhao Huang, Shibo Feng, Wanjin Feng, Peilin Zhao, Chunyan Miao
arXiv AI
Sep 10

NOAH: Learning the Full Patient Journey. A Longitudinal Multimodal Time-Aware Model for Representation and Forecasting

NOAH is a generative transformer that learns the full multimodal patient journey by integrating bidirectional time and a variational latent space. Trained on over 559 million clinical events from 431,000 hospital visits, it processes medical images, time‑series, numeric signals, categorical events, and both structured and unstructured records. The model supports autoregressive forecasting, zero‑shot classification, and counterfactual intervention simulation, yielding strong performance on clinical outcomes, ICD chapters, comorbidities, and time‑to‑event prediction.

By Tobias Susetzky, Raphael Rehms, Dmitrii Seletkov, \"Ozg\"un Turgut, Michelle Espranita Liman, Lisa Steinhelfer, Rickmer Braren, Daniel Rueckert