arXiv Machine Learning

Convergent Performance, Divergent Mechanisms in LoRA-Adapted Vision Foundation Models for Brain MRI

The study examines how LoRA adaptation of four Vision Foundation Models—DINOv3, SigLIP2, MerMED-FM, and BiomedCLIP—affects brain MRI tasks. Despite achieving similar segmentation accuracy (mean Dice 78‑81%), the models exhibit distinct internal dynamics, with early‑to‑mid layers being most crucial for segmentation. Restricting LoRA to these layers yields comparable performance while mitigating negative impacts on Alzheimer’s disease classification.

arXiv Computer Vision
Aug 27

Synergistic Modality-and-Slice Memory Framework for Cross-Modal 3D Brain Tumor Segmentation

The paper introduces MSM‑Seg, a dual‑memory segmentation framework for 3D multi‑modal brain tumor segmentation. It combines a modality‑and‑slice memory attention module to capture cross‑modal and spatial‑slice dependencies, a multi‑scale category‑agnostic prompt encoder for whole‑tumor guidance, and a modality‑adaptive fusion decoder to integrate complementary decoding information. Experiments on various MRI datasets show that MSM‑Seg surpasses state‑of‑the‑art methods for metastases and glioma tumor segmentation.

By Yuxiang Luo, Qing Xu, Hai Huang, Yuqi Ouyang, Xiangjian He, Zhen Chen, Wenting Duan, Jiebo Luo
arXiv Computer Vision
Aug 25

Tumor-aware augmentation with task-guided attention analysis improves rectal cancer segmentation from magnetic resonance images

arXiv:2605.05522v3 Announce Type: replace-cross Abstract: Although self-supervised pretraining is expected to learn broadly transferable representations, its effectiveness across imaging modalities s...

By Aneesh Rangnekar, Joao Miranda, Natally Horvat, Stephanie Chahwan, Samir Alrayess, Aditya Apte, Aditi Iyer, Eve LoCastro, Revathi Ravella, Marc J Gollub, Iva Petkovska, Jesse Joshua Smith, Paul Romesser, Julio Garcia-Aguilar, Harini Veeraraghavan, Joseph O Deasy
arXiv AI
Aug 11

LoRSA: Toward Generalizable Parameter-Efficient Fine-Tuning for Biomedical Downstream Tasks

arXiv:2608. 07749v1 Announce Type: cross Abstract: Parameter-efficient fine-tuning enables the adaptation of vision foundation models to biomedical tasks under limited computational resources, but a single low-rank update can constrain all task-specific changes to one narrow parameter subspace.

By Saed Moradi, Benyamin Ghojogh, M. Hadi Sepanj, Yimin Yang, Ashirbani Saha
arXiv Computer Vision
Sep 22

BrainIAC: Interactive 3D Brain Lesion Segmentation across Heterogeneous MRI Modalities with Online Adaptation

BrainIAC is a unified framework for 3D brain lesion segmentation that handles heterogeneous MRI modalities and adapts online during interactive segmentation. It combines a multi‑modal backbone trained with zero‑filling and random modality dropping, 3D interactive prompts that default to fully automatic predictions, and a two‑stage online adaptation guided by pseudo‑labels and a Click‑Centered Gaussian loss. Experiments on seven MRI datasets show that the components work synergistically, outperforming existing methods and generalizing to unseen modalities and pathologies.

By Wentian Xu, Anthony P Addison, Ziyun Liang, Harry Anthony, Guang Yang, Konstantinos Kamnitsas
arXiv AI
Jul 17

Parameter-efficient Prompt Tuning of Vision Foundation Model With Adaptive Focal Loss for Interpretable MCI Screening

arXiv:2607. 15047v1 Announce Type: cross Abstract: Mild Cognitive Impairment is a critical early stage of cognitive decline that frequently precedes Alzheimer's disease, yet its automated detection from neuropsychological drawing tests remains fundamentally constrained by data scarcity, class imbalance, and diagnostic ambiguity near clinical boundaries.

By Javad Khoramdel, Farhad Hoseyni, Amirhossein Nikoofard
arXiv Machine Learning
Jun 18

Structural MRI Synthesis for Alzheimer's Disease via Conditional Diffusion on Anatomical Masks

arXiv:2606. 18354v1 Announce Type: cross Abstract: Recent advances in generative machine learning models have significantly improved medical imaging, offering promising solutions for data augmentation, privacy preservation, and improved model generalization.

By Muge Zhang, Muhammad Ali Khaliq, Jamal Alsakran, Byeong Kil Lee, Jeeho Ryoo
arXiv AI
Sep 28

Combining General and Domain-Specific Pretext Tasks for Brain MR Image Segmentation

The paper investigates combining a domain‑specific self‑supervised task—voxel‑level brain age prediction—with a general task—image inpainting—to pretrain models for brain MRI segmentation. A multitask pretraining framework jointly optimizes both objectives, yielding representations that outperform single‑task pretraining and training from scratch on three segmentation benchmarks (multiple sclerosis lesions, ischemic stroke lesions, and cortical structures). The study demonstrates that integrating domain‑specific and general self‑supervised tasks benefits the development of generalizable neuroimaging foundation models.

By Tasneem Nasser, Susanne Schmid, Roberto Souza, Naser El-Sheimy