arXiv:2605. 01625v3 Announce Type: replace Abstract: Proteins are inherently multiscale physical systems whose functional properties emerge from coordinated structural organization across multiple spatial resolutions, ranging from atomic interactions to global fold topology.
By Viet Thanh Duy Nguyen, John K. Johnstone, Truong-Son Hy
arXiv:2606. 30170v1 Announce Type: cross Abstract: Generative molecular design is shaped by simple proxy benchmarks for drug-like properties and models pretrained on large pharmaceutical datasets.
By Matthias Blaschke, Daniel Kienzle, Zsuzsanna Koczor-Benda, Julian Lorenz, Rainer Lienhart, Fabian Pauly
Most multimodal learning methods improve how heterogeneous representations are aligned and fused, while post-fusion enhancement remains less explored. We propose Parallel Quantum Feature Augmentation (PQFA), a hybrid quantum-classical framework that applies multiple shallow variational quantum circuits to fused multimodal features.
BOOM is a new benchmark for evaluating out‑of‑distribution (OOD) molecular property predictions in machine learning. It provides chemically‑informed tests across common property prediction tasks and assesses over 150 model‑task combinations. The study shows that current models, including chemical foundation models, struggle to generalize OOD, with the best model still exhibiting three times higher error than in‑distribution predictions.
By Evan R. Antoniuk, Shehtab Zaman, Tal Ben-Nun, Peggy Li, James Diffenderfer, Busra Sahin, Obadiah Smolenski, Everett Grethel, Tim Hsu, Anna M. Hiszpanski, Kenneth Chiu, Bhavya Kailkhura, Brian Van Essen
arXiv:2606. 30961v1 Announce Type: cross Abstract: Advances in deep learning architectures and representations have enabled ML-driven chemical property prediction, but state-of-the-art (SOTA) models have remained largely confined to independent codebases and lack support for diverse chemical species.
By Jacob W. Toney, Samir Darouich, Yiran Wang, Aaron G. Garrison, Johannes K\"astner, Heather J. Kulik
arXiv:2607. 13466v1 Announce Type: new Abstract: Most multimodal learning methods improve how heterogeneous representations are aligned and fused, while post-fusion enhancement remains less explored.
By Mingzhu Wang, Yun Shang
Large-scale Vision-Language Models have demonstrated impressive transfer learning capabilities across a wide range of tasks. For few-shot classification, we observe that VLMs exhibit a notable ability to filter candidate categories and thus achieve high Top-K accuracy.
arXiv:2609.22342v1 Announce Type: cross
Abstract: Neural networks provide expressive representations for scientific computing. However, even sufficiently expressive networks can suffer training failu...
By Yi-Ran Xue, Rui Wang, Baigeng Wang, Chenan Wei
arXiv:2607. 20551v1 Announce Type: cross Abstract: Effective molecular representation learning is crucial for accurate molecular property prediction.
By Tianming Han, Li Zhang, Qi Zhao
The paper introduces Quantum-Inspired Nonlinear Adapters (QINA), compact modules that apply learnable trigonometric feature lifting followed by bounded nonlinear aggregation to pretrained vision models. QINA enables structured oscillatory basis functions with a norm-dependent Lipschitz bound, allowing spectral reshaping of representations without expanding the receptive field or significantly increasing parameters. Experiments on natural and medical imaging tasks show that QINA consistently outperforms identity baselines, fixed Fourier mappings, and parameter-matched generic adapters, demonstrating that geometry- and spectrum-aware adaptation is crucial for effective frozen-backbone transfer learning.
By Mostafa Mehdipour Ghazi
arXiv:2610.03463v1 Announce Type: cross
Abstract: Neural quantum states based on modern deep learning architectures have emerged as powerful representations for quantum many-body systems. In particul...
By Zhen Qin, Qing Qu, Alfred O. Hero III
arXiv:2607. 01336v1 Announce Type: cross Abstract: Neural Quantum States (NQS) are a remarkably expressive class of variational ans\"atze for quantum many-body wavefunctions, yet little is understood about their internal mechanisms: trained on variational objectives alone, how do NQS accurately capture physical observables that they have never been explicitly optimized for?
By Zihao Qi, Christopher Earls