arXiv Machine Learning

Out-of-Sample Embedding with Proximity Data: Projection versus Restricted Reconstruction

The paper reviews methods for adding a new point to a vector diagram using proximity data, a problem first examined by J.C. Gower in 1968. It classifies existing kernel-based approaches into two strategies: projection, analogous to adding a point in principal component analysis, and restricted reconstruction, which seeks to re‑optimize the multivariate analysis while keeping the existing diagram fixed. The authors show that each method can be derived from one of these two strategies and discuss when each strategy may be preferable.

arXiv Machine Learning
Jun 4

On Out-of-sample Embedding in UMAP

arXiv:2606. 04451v1 Announce Type: new Abstract: Neighbor embedding algorithms reveal correlations in high-dimensional data by constructing an equivalent graph representation in a lower-dimensional space.

By Mohammad Tariqul Islam, Jason W. Fleischer
arXiv Machine Learning
Sep 17

A General Kernel Framework for Non-CND Distance Measures Using |D|-Dimensional Sparse Landmark Embeddings

The paper introduces the Sparse Landmark Embedding (SLE) kernel, a new framework that removes the need for conditionally negative definite (CND) distance measures in kernel methods and Gaussian Processes. By embedding each input into a sparse feature vector using compactly supported bump functions centered at all training points, any standard positive semi-definite (PSD) kernel can be applied in this embedding space, guaranteeing PSD for arbitrary distance measures. The authors provide theoretical guarantees on PSD, sparsity, stability, and universal approximation, and show through experiments with geodesic and Wasserstein distances that the SLE kernel matches or surpasses domain-specific baselines in predictive accuracy and uncertainty quantification.

By Marcus M. Noack, Maher B. Alghalayini, Mark D. Risser
arXiv Machine Learning
Jun 16

Active Learning with Low-Rank Structure for Data Selection

arXiv:2606. 16045v1 Announce Type: new Abstract: In the data selection problem, the objective is to choose a small, representative subset of data that can be used to efficiently train a machine learning model.

By Vincent Cohen-Addad, Sasidhar Kunapuli, Vahab Mirrokni, Mahdi Nikdan, David P. Woodruff, Samson Zhou
arXiv Machine Learning
Sep 3

Exact Limits of Random Projections for Preserving Geometry: Distance Recovery, Nearest-Neighbor Rankings, and Covariance Shape in Gaussian Models

arXiv:2609. 02155v1 Announce Type: new Abstract: The Johnson-Lindenstrauss (JL) lemma guarantees that a random projection of $n$ points to $m=O(\varepsilon^{-2}\log n)$ dimensions preserves pairwise squared distances within relative error $\varepsilon$ with high probability, and this dimension order is asymptotically optimal.

By Piyush Sao
arXiv Machine Learning
Sep 25

Stacked SVD or SVD stacked? A Random Matrix Theory perspective on data integration

The paper compares two popular data‑integration techniques—Stack‑SVD, which concatenates datasets before performing singular value decomposition, and SVD‑Stack, which first decomposes each dataset separately and then aggregates the leading singular vectors. By deriving exact asymptotic performance expressions and phase transitions in a proportional regime, the authors show that neither method uniformly dominates the other when unweighted, but optimally weighted Stack‑SVD outperforms optimally weighted SVD‑Stack when the low‑rank signal is fully shared. They also demonstrate that SVD‑Stack can excel with partially shared components and provide practical algorithms for estimating optimal weights, supported by simulations and genomic experiments.

By Tavor Z. Baharav, Phillip B. Nicol, Rafael A. Irizarry, Rong Ma
arXiv Machine Learning
Jun 11

Enhancing Spectral Embedding through Robust and Flexible Knowledge Transfer in Electronic Health Records

arXiv:2606. 11570v1 Announce Type: cross Abstract: We propose a spectral-based, unsupervised representation learning framework to derive low-dimensional embeddings for clinical concepts and patients in rare disease cohorts from electronic health records, where data are high-dimensional but sample sizes are limited.

By Feiqing Huang, Zongqi Xia, Rong Ma, Tianxi Cai
arXiv Machine Learning
Aug 27

Efficient Estimation of High Information Projections using Nearest Neighbours

The paper introduces a new dimensionality reduction technique that enhances nearest‑neighbour relationships to estimate high‑information projections. It constructs a matrix encoding local covariance via nearest‑neighbour pairs and shows that, under standard regularity conditions, this matrix consistently estimates the Density Information Matrix (DIM), a non‑parametric analogue of the Fisher Information Matrix. The authors also demonstrate the method’s practical usefulness for clustering and outlier detection.

By David P. Hofmeyr
arXiv Machine Learning
4d ago

High-Dimensional Partial Least Squares: Spectral Analysis and Fundamental Limitations

The paper investigates Partial Least Squares (PLS) in high-dimensional settings, focusing on a model where two data matrices share a low-rank latent structure plus individual-specific components. By analyzing the singular vectors of the cross‑covariance matrix with random matrix theory, the authors derive asymptotic characterizations of how well the estimated latent directions align with the true ones. They show that the PLS variant based on Singular Value Decomposition (PLS‑SVD) outperforms separate principal component analysis in detecting the common latent subspace, while also identifying regimes where PLS‑SVD behaves counter‑intuitively or reaches fundamental limits.

By Victor L\'eger, Florent Chatelain