arXiv AI

Quantifying Trait-State Hierarchy in EEG Foundation Model and Signal Processing Embeddings

The paper investigates how EEG embeddings from signal processing and foundation models encode trait and state information. Using a hierarchy metric and kNN purity on a BCI dataset, it finds that most embeddings form a macro‑trait hierarchy with micro‑states inside, which hampers state discrimination. Normalizing embeddings reduces trait leakage and improves state classification accuracy by about 10%, and fine‑tuning shifts the hierarchy toward macro‑state organization, enhancing decoding performance.

arXiv Machine Learning
Jun 2

OmniEEG-Bench: A Standardized Evaluation Benchmark for EEG Foundation Models

arXiv:2606. 00815v1 Announce Type: new Abstract: Electroencephalography (EEG) supports a variety of brain-computer interface (BCI) tasks ranging from brain-state monitoring to human-LLM interactions.

By Ziling Lu, Zongsheng Li, Xinke Shen, Kexin Lou, Yingyue Xin, Xiaoqi Chen, Shinan Wang, Xiang Chen, Jiahao Fan, Chenyu Huang, Xin Xu, Zhoujie Hou, Chen Wei, Quanying Liu
arXiv Machine Learning
Sep 7

Brain4FMs: A Benchmark of Foundation Models for Electrical Brain Signal

Brain4FMs is a unified benchmark for evaluating brain foundation models (BFMs) on both scalp EEG and intracranial EEG (iEEG). It incorporates 17 representative models and 21 public datasets spanning clinical diagnosis, sleep staging, communication, and affective computing, and offers dataset-aware preprocessing, cross‑subject evaluation, and standardized downstream workflows. The benchmark highlights that no single BFM consistently outperforms others across all tasks, modalities, and adaptation protocols, prompting further exploratory analyses of model‑specific spatial, spectral, and discrete representations.

By Fanqi Shen, Enhong Yang, Jiahe Li, Junru Hong, Xiaoran Pan, Zhizhang Yuan, Meng Li, Yang Yang
arXiv AI
Sep 2

EEG-AS: Instance-Level Foundation Model Selection for EEG Foundation Models via Behavior Reconstruction

EEG-AS is an instance-level algorithm selection framework designed for EEG foundation models. It characterizes each EEG instance using latent embeddings, handcrafted neurophysiological features, and an anchor foundation model, then learns to reconstruct the behaviors of other foundation models from privileged prediction tokens. During inference, EEG-AS estimates these behaviors without running the full model portfolio, enabling efficient selection among seven EEG foundation models and significantly reducing the performance gap between the single best solver and the oracle upper bound across seven public EEG benchmarks.

By Yunzhen Zhang, Ruoxi Piao, Hasan Onur Keles, Mustafa Misir
arXiv Machine Learning
Oct 22

BrainPro: Process-conditioned Pretraining with Topographic Retrieval for Large EEG Models

BrainPro is a process‑conditioned self‑supervised pretraining framework for large EEG models that addresses two underexplored challenges: the underuse of mental‑process cues in masked pretraining and the variability of electrode montages across datasets. It maps dataset‑specific montages to a universal channel‑region template, retrieves spatial filters to create a topographically aligned basis, and learns a shared encoder along with process‑specific branches conditioned on protocol cues. Experiments on nine public BCI benchmarks show that BrainPro outperforms baselines, with ablations indicating that topographic retrieval and process‑conditioned representation learning jointly enhance EEG decoding.

By Yi Ding, Muyun Jiang, Weibang Jiang, Shuailei Zhang, Xinliang Zhou, Chenyu Liu, Shanglin Li, Yong Li, Cuntai Guan
arXiv Machine Learning
Jul 27

Interpretable EEG biomarkers with bag-of-waves: Spatial and temporal waveform dictionaries for low-data regimes

arXiv:2607. 22508v1 Announce Type: new Abstract: Electroencephalography (EEG) is widely used to diagnose neurological conditions, but its analysis usually relies on either predefined spectral features or deep neural networks.

By Athanasios Papastathopoulos-Katsaros, Steven T. Lee, Lin Yao, Ajay Thomas, Junseok Park, Matthew J. McGinley, Zhandong Liu