Microsoft Research

Introducing Quine: An AI research system designed for the complexity of biology

Microsoft Research introduces Quine, an early‑stage AI research system that builds a multimodal world model of biology. By linking insights across different biological scales and modalities, Quine enables scientists to computationally explore a much larger hypothesis space than intuition alone would allow. Experimental results feed back into the system, helping researchers refine future research directions.

arXiv AI
Jun 30

Accelerating scientific discovery with Co-Scientist

arXiv:2502. 18864v2 Announce Type: replace Abstract: Scientific discovery is driven by scientists generating novel hypotheses for complex problems that undergo rigorous experimental validation.

By Juraj Gottweis, Wei-Hung Weng, Alexander Daryin, Tao Tu, Petar Sirkovic, Artiom Myaskovsky, Grzegorz Glowaty, Felix Weissenberger, Alessio Orlandi, Dan Popovici, Anil Palepu, Keran Rong, Ryutaro Tanno, Khaled Saab, Fan Zhang, Jacob Blum, Andrew Carroll, Kavita Kulkarni, Nenad Tomasev, Dina Zverinski, Ivor Rendulic, Elahe Vedadi, Florian Hasler, Luka Rimanic, Marina Boia, Ivan Budiselic, Ben Feinstein, Mathias Bellaiche, Tom Sheffer, Jan Freyberg, Jeremy Ratcliff, Ottavia Bertolli, Katherine Chou, Avinatan Hassidim, Burak Gokturk, Amin Vahdat, Yuan Guan, Vikram Dhillon, Eeshit Dhaval Vaishnav, Byron Lee, Tiago R D Costa, Jos\'e R Penad\'es, Gary Peltz, Yossi Matias, James Manyika, Demis Hassabis, Yunhan Xu, Pushmeet Kohli, Annalisa Pawlosky, Alan Karthikesalingam, Vivek Natarajan
arXiv AI
Sep 18

ScientistTwo: Pioneering the Human Knowledge Frontier with Autonomous AI

The paper introduces ScientistTwo, a fully autonomous multi‑agent framework that takes a scientific problem, establishes baselines, generates hypotheses, and coordinates specialized agents to conduct an end‑to‑end discovery cycle without human intervention. It rigorously tests and refines its methods through automated experiments, ablation studies, and a closed‑loop peer‑review engine. Benchmarking against top conferences (ICLR, ICML, NeurIPS) shows that ScientistTwo produces expert‑level, publishable papers and codebases that outperform human state‑of‑the‑art models and receive higher review ratings under automated AI review.

By Jaehyun Nam, Jinsung Yoon, Yanzhou Pan, Yubo Wang, Rui Meng, Parthasarathy Ranganathan, Tomas Pfister
arXiv AI
Aug 28

Accelerating Scientific Research with Gemini in the Real-World

The paper extends Co‑Scientist, a Gemini‑based multi‑agent system, and validates it in real‑world scientific settings. In materials science it designed a safe precursor route for MXenes and achieved single‑attempt growth of monolayer MoS₂, MoSe₂, and WS₂. In biology it predicted swarming phenotypes of engineered E. coli, and in computer science it discovered a superior inference‑time scaling architecture for HealthBench. A double‑blind study with 30 experts showed that Co‑Scientist’s reliability modules reduce hallucination and plagiarism while improving research safety.

By Samuel Schmidgall, Xiaokai Zhu, Marian Shaw, Lin Yang, Valentin Li\'{e}vin, Jingyun Yang, Yuchen Zhuang, Tim Strother, Alex Bijamov, Min Woo Sun, Anil Palepu, Justin Chen, David Steiner, Jacqueline Shreibati, Wei-Hung Weng, Yilin Zhao, Xingjian Hu, Nicholas Zahn, Sadhya Garg, Julia Kirby, Yuxiang Gan, Jiaoli Li, Divy Thakkar, Shekoofeh Azizi, David Racz, Juraj Gottweis, Vivek Natarajan, Chenglin Wu, Tal Danino, Keran Rong, Haozhe Wang, Benoit Schillings, Yong Cheng, Quoc V. Le, Tao Tu
arXiv AI
Aug 20

Science Done on a Machine by a Machine: AI Agents in Computational Chemistry

The Perspective reviews the rapid growth of agentic AI systems in computational chemistry, noting an increase from a handful in 2024 to about fifty by August 2026. These systems are evolving from assisting with specific tasks to autonomously designing, executing, and analyzing in‑silico experiments, even drafting manuscripts. While fully autonomous AI scientists are not yet realized and human oversight remains, the trend toward commoditized generalist agents suggests a future where specialized systems may become obsolete, prompting reflection on the field’s direction and priorities.

By Pavlo O. Dral, Hassan Nawaz, Arif Ullah
arXiv AI
Jul 16

Networked Intelligence: Active Shared Context Graphs for Human-AI Team Science

arXiv:2607. 13220v1 Announce Type: new Abstract: Most AI-for-science systems focus on scaling a single reasoning process through better models, larger context windows, long-horizon agentic execution, or digital co-scientists working with one principal user.

By Sutanay Choudhury, Jeffrey J. Czajka, Lummy M. O. Monteiro, Erin Bredeweg, Jason McDermott, Katherine Wolf, Alex Beliaev, Josh Elmore, Paul Piehowski, Kylee Tate, Yuqian Gao, Aivett Bilbao, Kelly Stratton, Scott Baker, Jaydeep P. Bardhan, Kristin Burnum Johnson, Chris Oehmen, Robert Rallo
Hugging Face Trending Papers
Jun 22

AI Scientists as Engines of Discovery: A Case for Development within Reformed Institutions

Agentic artificial intelligence (AI) systems are beginning to assist, accelerate, and partially automate scientific discovery, performing tasks that span literature synthesis, code generation, data analysis, hypothesis proposal, and model criticism. We argue that this transition is qualitative rather than incremental, and that suitably designed multi-agent systems may evolve from passive computational tools into ``AI scientists'' that can expand the hypothesis-generating and verification capacity of science.

arXiv AI
Sep 16

ScienceBuddy: Recursive-in-Recursive Self-Improvement for Interactive Scientific Agents

arXiv:2609.17523v1 Announce Type: new Abstract: We introduce and release ScienceBuddy, an interactive scientific research workspace that brings continually improving scientific agents into researcher...

By Shuhan Xue, Jianyuan Zhong, Ziyuan Nan, Wenbin Li, Zhaochen Yu, Jinchao Ding, Qiang Gao, Pengyu Zhan, Yuntong Zhang, Tian Cheng, Zhenfei Yin, Yingcheng Wu, Ling Yang