arXiv Computation and Language

Scientific Domain Knowledge Improves Vision-Language Fundus Models

The paper introduces PubMed-Ophtha, a hierarchical dataset of 102,023 panels with subcaptions from 15,842 open‑access PubMed Central articles, designed to provide high domain density for vision‑language models in ophthalmology. The authors fine‑tuned identical CLIP models on this dataset, on medical reports, and on general biomedical literature, and found that the domain‑specific literature model achieved the best average performance across 110 clinical tasks, with a mean linear probing AUROC of 88.63% versus 85.68% for medical reports. Even when restricting the dataset to fundus images or matching the image count of the medical report dataset, performance remained high, suggesting that the gains stem from the domain density of the literature.

arXiv Machine Learning
Jul 9

MedPMC: A Systematic Framework for Scaling High-Fidelity Medical Multimodal Data for Foundation Models

arXiv:2607. 07673v1 Announce Type: cross Abstract: Medicine is inherently multimodal, requiring clinicians to synthesize information across diverse data streams.

By Hyunjae Kim, Dain Kim, Pan Xiao, Serina S. Applebaum, Younjoon Chung, Xuguang Ai, Yu Yin, Roy Jiang, Yuexi Du, Yawen Wei, Yiming Kong, Tuo Guo, Zhiyuan Cao, Mengmeng Du, Yuelei Fu, Yan Hu, Rui Shi, Gui Yang, Kevin W. Jin, Yuntian Liu, Yuxuan Tian, Jonathan Marquez, Zhen Chen, Sheng Zhang, Hoifung Poon, Hua Xu, Jaewoo Kang, Qingyu Chen
Hugging Face Trending Papers
Jul 6

Solve the Missing First Step: Can VLMs Standardize Raw Heterogeneous Medical Data?

As vision-language models (VLMs) are increasingly applied to medical AI, existing benchmarks mainly focus on evaluating their diagnosis ability over given medical images and texts, implicitly assuming that standardized medical images, texts or question-answer pairs are already prepared. However, this assumption does not hold when we apply VLMs in real clinical practice, where medical data is often raw, heterogeneous, and fragmented across different sources.

arXiv Computer Vision
Sep 7

Solve the Missing First Step: Can VLMs Standardize Raw Heterogeneous Medical Data?

The paper introduces the Medical Data Standardization Benchmark (MDS‑Bench), which evaluates vision‑language models (VLMs) on their ability to process raw, heterogeneous medical data. Models must identify source formats, convert raw images into VLM‑compatible inputs, extract relevant text, and organize the results into structured image‑text pairs. Experiments show that even the top VLM, Gemini 3 Flash, achieves only a 48.6% end‑to‑end success rate, underscoring the challenge of raw data standardization in clinical settings.

By Xin Chen, Dongliang Xu, Cunhao Zhu, Xudong Luo, Haoyang Lyu, Xiaoxiao Sun, Serena Yeung-Levy, Yue Yao
arXiv AI
Jun 11

OpenMedReason: Scientific Reasoning Supervision for Medical Vision-Language Models

arXiv:2606. 12169v1 Announce Type: cross Abstract: High-stakes clinical use of large vision-language models (LVLMs) requires reasoning that is grounded in visual evidence and clinical knowledge, not just correct final answers.

By Negin Baghbanzadeh, Pritam Sarkar, Michael Colacci, Abeer Badawi, Adibvafa Fallahpour, Arash Afkanpour, Leonid Sigal, Ali Etemad, Elham Dolatabadi
arXiv Machine Learning
Jul 9

Comparative Study of Domain-adapted VLMs for General Document Visual Question Answering

arXiv:2607. 07179v1 Announce Type: cross Abstract: Document Visual Question Answering (DocVQA) presents a complex multimodal challenge, requiring models to exploit visual, textual, and layout information from documents.

By Miguel Lopez-Duran, Elena Marrero, Julian Fierrez, Marta Robledo-Moreno, Ruben Vera-Rodriguez, Daniel DeAlcala, Aythami Morales, Ruben Tolosana, Oscar Delgado, Alvaro Ortigosa, Javier Ortega-Garcia
arXiv AI
Sep 2

Benchmarking Vision-Language Models for Automated Pathology Diagnosis and Report Generation

arXiv:2609.00866v1 Announce Type: cross Abstract: The rapid advancement of vision-language models (VLMs) has accelerated progress in computational pathology; however, whole-slide image (WSI)-based pa...

By Yumi Lee, Harim Oh, Hyoryung Kim, Minji Kim, Eunsu Kim, Hyeseong Lee, Junya Fukuoka, Andrey Bychkov, Jijgee Munkhdelger, Rajiv Kumar Kaushal, Ayushi Sahay, Rajni Yadav, Bharathi Prabakaran, Sulen Sarioglu, Serdar Balc{\i}, Ilknur Turkmen, Yuri Tolkach, Christian Harder, Julian Westerdorf, Reinhard Buettner, Audun Ljone Henriksen, Sepp De Raedt, Byung Hyun Lee, Sungjin Lim, Joohoon Lee, Gwanghyun Kim, Se Young Chun, Suryakant Singh, Saarthak Kapse, Prateek Prasanna, Kyung A Kim, Yousun Kang, Sehwan Yoo, Sungman Hong, Shubham Innani, Michael Feldman, Spyridon Bakas, Ujjwal Baid, Prasad Dutande, Suhas Gajare, Bhakti Baheti, Serkan S\"okmen, Ece Tu\u{g}ba Cebeci, Ahmet Hal{\i}c{\i}, Musa Balc{\i}, Kardelen Pe\c{c}enek, Srividhya Sainath, Kyongseok Jang, Messi H. J. Lee, Noorul Wahab, Bodong Du, Jiaming Zhang, Qixiang Zhang, Jang-Hwan Choi, Sangjeong Ahn
arXiv Computer Vision
Aug 25

An end-to-end-trained vision-language model for native-language prostate pathology report generation

An end-to-end-trained vision-language model generates prostate biopsy reports in native languages, demonstrated in German. The system uses a tokenizer and model trained from scratch and an automated pipeline that splits composite reports into image-text pairs, producing 17,344 pairs from 2,402 cases without manual annotation. Evaluated on clinical attributes, it achieves 96.2% F1 for malignancy detection and 65.2% for Gleason grading, comparable to an FDA-cleared classifier and validated on external cohorts.

By Christian Grashei, Fabian G\"ulhan, Maximilian Legnar, Fabian St\"ogbauer, Cleo-Aron Weis, Carolin Mogler, Peter Sch\"uffler