arXiv Machine Learning

Wavenumber-Aware Deep Learning for Robust Analysis of Raman Spectra

The paper introduces a wavenumber-aware deep learning approach that represents each Raman spectral point as an intensity–wavenumber pair and uses Transformer positional encodings derived from the wavenumber. This method remains robust to noise, sparse sampling, and partial spectral coverage across various neural network architectures, outperforming index-based and learned encodings when only part of the spectrum is observed. The approach was validated on Raman spectra from three bacterial species, their synthetic mixtures, and a public 30-isolate bacterial benchmark, demonstrating consistent performance on unseen sampling grids.

arXiv Machine Learning
Sep 18

Sharpness-Aware Minimization (SAM) Improves Classification Accuracy of Bacterial Raman Spectral Data Enabling Portable Diagnostics

Sharpness-Aware Minimization (SAM) is applied to improve the generalization of machine learning models for classifying bacterial Raman spectra, a technique that could enable rapid, portable diagnostics for antimicrobial resistance. The study shows that SAM can increase classification accuracy by up to 10.5% on a single data split and by an average of 2.7% across multiple splits compared to the traditional Adam optimizer. These gains demonstrate SAM’s potential to enhance the clinical utility of AI-powered Raman spectroscopy tools.

By Kaitlin Zareno, Jarett Dewbury, Siamak K. Sorooshyari, Hossein Mobahi, Loza F. Tadesse
arXiv Computer Vision
Oct 26

Physics-Aware Self-Supervised Pretraining on Multi-Domain Raman Spectra

The paper presents a physics‑aware, multi‑domain self‑supervised learning framework for Raman spectroscopy that uses a masked autoencoder with a sparse Voigt‑profile decoder and a denoising objective. It learns transferable spectral representations from diverse biological, chemical, forensic, and materials datasets, and demonstrates improved performance on substance classification, component identification, concentration estimation, and spectral denoising. The study shows that self‑supervised pretraining is especially beneficial for tasks with limited labeled data, that attention‑based probing reveals richer information than linear probing, and that larger encoders benefit more from pretraining.

By Charalampos Davalas, Georgios Levantinos, Anastasios Dimitriou, Nikolaos Papanikolaou, Georgios Th. Papadopoulos, Dimitrios Michail
arXiv Machine Learning
Jun 15

Machine Learning for Biomedical Raman Spectroscopy: From Spectral Acquisition to Clinical Translation

arXiv:2606. 14169v1 Announce Type: new Abstract: Raman spectroscopy provides label-free, chemically specific characterization of biological systems and has become an important tool for cancer diagnosis, molecular subtyping, microbiological identification, and intraoperative decision support.

By Bogdan Oancea, Ana Maria Seciu-Grama, Nicoleta Siminea, Laura Mihaela Stefan, Alice Stoica, Joel Sjoberg, Marian Necula, Ana-Maria Prelipcean, Corneliu Ovidiu Vrancianu, Eduard Milea, Andrei P\u{a}un, Ion Petre, Mihaela P\u{a}un
Hugging Face Trending Papers
Aug 12

Domain-Aware Lightweight Spectral-Grouped Convolutions for Hyperspectral Fish Freshness Classification

Hyperspectral imaging (HSI) offers nondestructive assessment of fish freshness by detecting biochemical alterations across spectral bands. However, conventional deep learning approaches do not fully address the particular characteristics of HSI data, such as spectral dominance over spatial textures, ordinal label structure, and a small number of training samples.