arXiv:2607. 11508v1 Announce Type: cross Abstract: Causal discovery, the process of recovering underlying causal structures from observational data, is a fundamental pursuit across scientific disciplines.
By Jie Qiao, Ruichu Cai, Zijian Li, Weilin Chen, Pengfei Hua, Boyan Xu, Zhengming Chen, Zhifeng Hao, Peng Cui
arXiv:2606. 00483v1 Announce Type: cross Abstract: Genotype-based cis-expression prediction depends on accurately modeling local regulatory architecture.
By Lei Huang, Hui Shen, Kuan-Jui Su, Chuan Qiu, Martha Isabel Gonzalez-Ramirez, Anqi Liu, Zhe Luo, Yun Gong, Yipu Zhang, Dawei Li, Chaoyang Zhang, Hong-Wen Deng
arXiv:2606. 18535v1 Announce Type: cross Abstract: Multi-cause observational studies contain information about unmeasured confounding through the dependence structure among causes.
By Yordan P. Raykov, Hengrui Luo, Justin D. Strait, Wasiur R. KhudaBukhsh
arXiv:2601. 14590v3 Announce Type: replace Abstract: Counterfactual explanations (CFEs) provide human-centric interpretability by identifying the minimal, actionable changes required to alter a machine learning model's prediction.
By Shovito Barua Soumma, Asiful Arefeen, Stephanie M. Carpenter, Melanie Hingle, Hassan Ghasemzadeh
arXiv:2607. 19618v1 Announce Type: cross Abstract: Genomic language models achieve strong performance across regulatory-genomics tasks, yet what these models internally represent remains opaque, and the field lacks a principled procedure for verifying that an apparent ``concept'' inside a model is real rather than an artifact of sequence composition.
By Sarwan Ali
arXiv:2404. 02141v5 Announce Type: replace-cross Abstract: In both observational data and randomized control trials, researchers select statistical models to articulate how the outcome of interest varies with combinations of observable covariates.
By Aparajithan Venkateswaran, Anirudh Sankar, Arun G. Chandrasekhar, Tyler H. McCormick
arXiv:2606. 05797v1 Announce Type: new Abstract: Longitudinal treatment decisions require predicting potential outcomes under future treatment sequences in the presence of time-varying confounding, heterogeneous patient dynamics, and limited domain-specific data.
By Amirhossein Zare, Amirhessam Zare, Herlock Rahimi, Reza Salarikia, Mohammad Kashkooli
arXiv:2606. 17491v1 Announce Type: cross Abstract: Binary data factorization is common, but real-valued methods ignore discreteness and yield hard-to-interpret factors.
By Adolphus Wagala, Mehmet Samur, Giovanni Parmigiani
arXiv:2604. 11305v3 Announce Type: replace Abstract: Conformal selection (CS) uses calibration data to identify test inputs whose unobserved outcomes are likely to satisfy a pre-specified minimal quality requirement, while controlling the false discovery rate (FDR).
By Meiyi Zhu, Osvaldo Simeone
arXiv:2601. 20819v2 Announce Type: replace-cross Abstract: Machine learning predictions are increasingly used to supplement incomplete or costly-to-measure outcomes in fields such as biomedical research, environmental science, and social science.
By Yilin Song, Dan M. Kluger, Harsh Parikh, Tian Gu
arXiv:2607. 04527v1 Announce Type: cross Abstract: Biological systems exhibit a hierarchical structure, characterised by directed flow from upstream regulators to downstream effects.
By Stephen Asiedu, David Watson
arXiv:2604. 14514v2 Announce Type: replace Abstract: Healthcare disparities persist across socioeconomic boundaries, often attributed to unequal access to screening, diagnostics, and therapeutics.
By Michal Rosen-Zvi, Yoav Kan-Tor, Michael Danziger, Agata Ferretti, Javier Aula-Blasco, Julia Falcao, Ron Shamir, Mira Marcus-Kalish, Mordechai Muszkat