arXiv:2507. 21438v2 Announce Type: replace Abstract: Ontologies and knowledge graphs require continuous evolution to remain comprehensive and accurate, but manual curation is labor intensive.
By Vishal Raman, Vijai Aravindh R, Abhijith Ragav
arXiv:2607. 18029v1 Announce Type: cross Abstract: Researchers need to answer ad-hoc questions about the contents of domain-specific archives but often lack the expertise to write structured queries on the metadata.
By Blake G. Fitch, Cato Elia Kurtz
arXiv:2607. 23219v1 Announce Type: new Abstract: Machine learning interatomic potentials (MLIPs) approximate quantum-mechanical energies and forces---conventionally computed by density functional theory (DFT) or wave-function methods---at a fraction of the cost.
By Daniel Hern\'andez, Jong Hyun Jung, Yuji Ikeda, Yongliang Ou, Pranav Kumar, Tom Sch\"achtel, Wenchuan Liu, Xin Li, Xi Zhang, Xiang Xu, Lifang Zhu, Fritz K\"ormann, Steffen Staab, Blazej Grabowski
arXiv:2607. 28662v1 Announce Type: new Abstract: Large language models extract entities and relationships from unstructured documents fluently but inconsistently: type vocabularies fracture across documents, the same person surfaces under several name variants, relationships duplicate, and distinct individuals who share a name risk silent conflation.
By Vaibhav Dangaich, Kevin Lewis, Kundeshwar Pundalik
arXiv:2606. 12451v1 Announce Type: new Abstract: Large language models deployed as agents over large tool catalogs face a critical tool-retrieval bottleneck.
By Ashutosh Hathidara, Sai Shruthi Sistla, Sebastian Schreiber, Sahil Bansal
arXiv:2607. 28692v1 Announce Type: new Abstract: Large language model (LLM) agents have been increasingly adopted in scientific research for organizing and invoking specialized computational tools.
By Yuqi Tang, Chenyi Zhou, Libin Wang, Keyan Ding, Qiang Zhang, Huajun Chen
arXiv:2607. 17963v1 Announce Type: new Abstract: Ontology extension refers to the process of enriching an existing ontology in response to emerging requirements, making it more complete.
By Anna Sofia Lippolis, Mohammad Javad Saeedizade, Stefan Schmid, Simon Blattner, Robin Keskis\"arkk\"a, Aldo Gangemi, Eva Blomqvist, Andrea Giovanni Nuzzolese
arXiv:2605. 28965v2 Announce Type: replace Abstract: Linking free-text phenotype descriptions to ontology terms, typically referred to as phenotype annotation, is essential for the cross-study integration of comparative morphological data.
By James P. Balhoff, Hilmar Lapp
arXiv:2605. 28787v2 Announce Type: replace-cross Abstract: In the era of autonomous agents, machine-actionable data is critical for data-driven workflows.
By Shiyu Chen, Tarfah Alrashed, Alon Halevy, Natasha Noy
arXiv:2607. 16201v1 Announce Type: new Abstract: Ontology engineering remains a critical bottleneck in knowledge-intensive AI systems.
By Sergei Sergienko
arXiv:2607. 18927v1 Announce Type: new Abstract: We present OntoBook, a method that converts medical ontology structure into pretraining signal for encoder language models.
By Rian Touchent (ALMAnaCH), \'Eric de la Clergerie (ALMAnaCH)
arXiv:2607. 06482v1 Announce Type: cross Abstract: Current benchmarks for evaluating Large Language Models (LLMs) in data analysis often fail to reflect real-world settings.
By So Hasegawa, Shailaja Keyur Sampat, Lei Liu, Wei-Peng Chen