arXiv AI

{\lambda}Split: Self-Supervised Content-Aware Spectral Unmixing for Fluorescence Microscopy

arXiv:2603. 23647v2 Announce Type: replace-cross Abstract: In fluorescence microscopy, spectral unmixing aims to recover individual fluorophore concentrations from spectral images that capture mixed fluorophore emissions.

arXiv Computer Vision
Sep 3

SlowFast-SCI: Slow-Fast Deep Unfolding Learning for Spectral Compressive Imaging

SlowFast‑SCI introduces a dual‑speed deep‑unfolding framework for spectral compressive imaging that combines a slow, pre‑trained backbone with a fast, test‑time adaptation stage. The slow phase distills a priors‑based model into a compact fast‑unfolding network, while the fast phase embeds lightweight modules that self‑supervise at test time without retraining the backbone. This design yields significant reductions in parameters and FLOPs, improves out‑of‑distribution PSNR by up to 5.79 dB, and accelerates adaptation four‑fold, all while remaining modular enough to integrate with any existing deep‑unfolding system.

By Haijin Zeng, Xuan Lu, Jiezhang Cao, Kai Zhang, Yurong Zhang, Qiangqiang Shen, Guoqing Chao, Li Jiang, Yongyong Chen, Jingyong Su, Jie Liu
arXiv AI
Sep 25

A Multimodal 3D Foundation Model for Light Sheet Fluorescence Microscopy Enables Few-Shot Segmentation, Classification, and Deblurring

The paper presents a 3D foundation model for light sheet fluorescence microscopy (LSM) that is pretrained on a large curated set of 3D images from various organisms, stains, and imaging protocols. By jointly optimizing for masked reconstruction and image‑text alignment, the model learns transferable volumetric representations that dramatically reduce the need for annotated data. The pretrained backbone enables efficient few‑shot adaptation to downstream tasks such as segmentation, classification, and deblurring, consistently outperforming baselines according to standard metrics and expert evaluation.

By Adina Scheinfeld, Haotan Zhang, Shang Mu, Rudolf L. M. van Herten, Lucas Stoffl, Ali Erturk, Zhuhao Wu, Johannes C. Paetzold
arXiv AI
Jul 28

scMIR: a vision-language foundation model for single-cell light microscopy image representation

arXiv:2607. 22712v1 Announce Type: cross Abstract: Single-cell light microscopy images have become an important data source for characterizing cell phenotypes, but their complexity and heterogeneity pose challenges to high-throughput automated analysis.

By Yifan Shang (Department of Biomedical Engineering, The Chinese University of Hong Kong, Hong Kong, China, College of Computer Science and Electronic Engineering, Hunan University, Changsha, China), Jiahui Tan (College of Computer Science and Electronic Engineering, Hunan University, Changsha, China), Xiangxiang Zeng (College of Computer Science and Electronic Engineering, Hunan University, Changsha, China), Renjie Zhou (Department of Biomedical Engineering, The Chinese University of Hong Kong, Hong Kong, China)
arXiv Computer Vision
Sep 15

Hyperspectral Image Restoration and Super-resolution with Physics-Aware Deep Learning for Biomedical Applications

The paper introduces a self‑supervised, physics‑aware deep learning method for hyperspectral image restoration and super‑resolution in biomedical imaging. It achieves 16× pixel super‑resolution and 12× faster imaging without external training data, preserving biological integrity across synthetic and experimental samples. The approach also reveals disease‑associated metabolic changes and offers physical insights into the model’s workings, with all code released as open source.

By Yuchen Xiang, Zhaolu Liu, Monica Emili Garcia-Segura, Daniel Simon, Boxuan Cao, Vincen Wu, Kenneth Robinson, Yu Wang, Ronan Battle, Najah Sobhan, Robert T. Murray, Xavier Altafaj, John Marshall, Luca Peruzzotti-Jametti, Zoltan Takats